Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05395

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05390 and ABZR87_RS05395 are separated by 227 nucleotidesABZR87_RS05395 and ABZR87_RS05400 overlap by 4 nucleotides ABZR87_RS05390: ABZR87_RS05390 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 1,134,749 to 1,137,277 _RS05390 ABZR87_RS05395: ABZR87_RS05395 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 1,137,505 to 1,138,308 _RS05395 ABZR87_RS05400: ABZR87_RS05400 - DGQHR domain-containing protein, at 1,138,305 to 1,140,638 _RS05400 Position (kb) 1137 1138 1139Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1137.265 kb on + strandat 1137.265 kb on + strandat 1137.266 kb on - strandat 1137.266 kb on - strandat 1137.266 kb on - strandat 1137.294 kb on + strandat 1137.295 kb on - strandat 1137.298 kb on + strandat 1137.298 kb on + strandat 1137.299 kb on - strandat 1137.299 kb on - strandat 1137.299 kb on - strandat 1137.299 kb on - strandat 1137.352 kb on + strandat 1137.353 kb on - strandat 1137.414 kb on + strandat 1137.480 kb on + strandat 1137.480 kb on + strandat 1137.480 kb on + strandat 1137.495 kb on + strandat 1137.532 kb on - strandat 1137.602 kb on - strand, within ABZR87_RS05395at 1137.602 kb on - strand, within ABZR87_RS05395at 1137.605 kb on - strand, within ABZR87_RS05395at 1137.605 kb on - strand, within ABZR87_RS05395at 1137.605 kb on - strand, within ABZR87_RS05395at 1137.605 kb on - strand, within ABZR87_RS05395at 1137.698 kb on - strand, within ABZR87_RS05395at 1137.698 kb on - strand, within ABZR87_RS05395at 1137.698 kb on - strand, within ABZR87_RS05395at 1137.700 kb on - strand, within ABZR87_RS05395at 1137.700 kb on - strand, within ABZR87_RS05395at 1137.700 kb on - strand, within ABZR87_RS05395at 1137.700 kb on - strand, within ABZR87_RS05395at 1137.700 kb on - strand, within ABZR87_RS05395at 1137.700 kb on - strand, within ABZR87_RS05395at 1137.700 kb on - strand, within ABZR87_RS05395at 1137.700 kb on - strand, within ABZR87_RS05395at 1137.702 kb on - strand, within ABZR87_RS05395at 1137.702 kb on - strand, within ABZR87_RS05395at 1137.741 kb on - strand, within ABZR87_RS05395at 1137.807 kb on - strand, within ABZR87_RS05395at 1137.807 kb on - strand, within ABZR87_RS05395at 1137.856 kb on - strand, within ABZR87_RS05395at 1137.960 kb on - strand, within ABZR87_RS05395at 1137.967 kb on - strand, within ABZR87_RS05395at 1137.976 kb on - strand, within ABZR87_RS05395at 1137.976 kb on - strand, within ABZR87_RS05395at 1138.046 kb on - strand, within ABZR87_RS05395at 1138.048 kb on - strand, within ABZR87_RS05395at 1138.049 kb on - strand, within ABZR87_RS05395at 1138.135 kb on - strand, within ABZR87_RS05395at 1138.135 kb on - strand, within ABZR87_RS05395at 1138.171 kb on - strand, within ABZR87_RS05395at 1138.171 kb on - strand, within ABZR87_RS05395at 1138.192 kb on - strand, within ABZR87_RS05395at 1138.203 kb on - strand, within ABZR87_RS05395at 1138.207 kb on - strand, within ABZR87_RS05395at 1138.207 kb on - strand, within ABZR87_RS05395at 1138.207 kb on - strand, within ABZR87_RS05395at 1138.228 kb on - strandat 1138.234 kb on - strandat 1138.323 kb on - strandat 1138.374 kb on + strandat 1138.374 kb on + strandat 1138.374 kb on + strandat 1138.374 kb on + strandat 1138.375 kb on - strandat 1138.375 kb on - strandat 1138.567 kb on + strand, within ABZR87_RS05400at 1138.567 kb on + strand, within ABZR87_RS05400at 1138.567 kb on + strand, within ABZR87_RS05400at 1138.567 kb on + strand, within ABZR87_RS05400at 1138.567 kb on + strand, within ABZR87_RS05400at 1138.568 kb on - strand, within ABZR87_RS05400at 1138.568 kb on - strand, within ABZR87_RS05400at 1138.568 kb on - strand, within ABZR87_RS05400at 1138.568 kb on - strand, within ABZR87_RS05400at 1138.568 kb on - strand, within ABZR87_RS05400at 1138.568 kb on - strand, within ABZR87_RS05400at 1138.598 kb on + strand, within ABZR87_RS05400at 1138.599 kb on - strand, within ABZR87_RS05400at 1138.599 kb on - strand, within ABZR87_RS05400at 1138.789 kb on + strand, within ABZR87_RS05400at 1138.789 kb on + strand, within ABZR87_RS05400at 1138.789 kb on + strand, within ABZR87_RS05400at 1138.789 kb on + strand, within ABZR87_RS05400at 1138.790 kb on - strand, within ABZR87_RS05400at 1138.790 kb on - strand, within ABZR87_RS05400at 1138.791 kb on + strand, within ABZR87_RS05400at 1138.791 kb on + strand, within ABZR87_RS05400at 1138.791 kb on + strand, within ABZR87_RS05400at 1138.791 kb on + strand, within ABZR87_RS05400at 1138.792 kb on - strand, within ABZR87_RS05400at 1138.792 kb on - strand, within ABZR87_RS05400at 1138.802 kb on + strand, within ABZR87_RS05400at 1138.859 kb on - strand, within ABZR87_RS05400at 1138.859 kb on - strand, within ABZR87_RS05400at 1138.878 kb on + strand, within ABZR87_RS05400at 1138.895 kb on - strand, within ABZR87_RS05400at 1138.938 kb on - strand, within ABZR87_RS05400at 1138.967 kb on - strand, within ABZR87_RS05400at 1139.009 kb on + strand, within ABZR87_RS05400at 1139.010 kb on - strand, within ABZR87_RS05400at 1139.041 kb on - strand, within ABZR87_RS05400at 1139.059 kb on - strand, within ABZR87_RS05400at 1139.062 kb on + strand, within ABZR87_RS05400at 1139.062 kb on + strand, within ABZR87_RS05400at 1139.069 kb on + strand, within ABZR87_RS05400at 1139.070 kb on - strand, within ABZR87_RS05400at 1139.070 kb on - strand, within ABZR87_RS05400at 1139.100 kb on - strand, within ABZR87_RS05400at 1139.100 kb on - strand, within ABZR87_RS05400at 1139.104 kb on - strand, within ABZR87_RS05400at 1139.167 kb on + strand, within ABZR87_RS05400at 1139.178 kb on - strand, within ABZR87_RS05400at 1139.268 kb on - strand, within ABZR87_RS05400at 1139.268 kb on - strand, within ABZR87_RS05400at 1139.268 kb on - strand, within ABZR87_RS05400at 1139.295 kb on + strand, within ABZR87_RS05400at 1139.295 kb on + strand, within ABZR87_RS05400at 1139.295 kb on + strand, within ABZR87_RS05400at 1139.296 kb on - strand, within ABZR87_RS05400at 1139.296 kb on - strand, within ABZR87_RS05400

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,137,265 + -1.0
1,137,265 + +0.2
1,137,266 - +0.4
1,137,266 - -1.3
1,137,266 - -0.8
1,137,294 + -2.2
1,137,295 - -0.4
1,137,298 + +0.1
1,137,298 + -0.1
1,137,299 - -0.4
1,137,299 - -2.1
1,137,299 - +1.9
1,137,299 - +1.4
1,137,352 + -0.4
1,137,353 - +0.3
1,137,414 + -0.6
1,137,480 + -2.4
1,137,480 + -2.1
1,137,480 + -2.0
1,137,495 + +0.6
1,137,532 - -0.5
1,137,602 - ABZR87_RS05395 0.12 -0.9
1,137,602 - ABZR87_RS05395 0.12 +0.7
1,137,605 - ABZR87_RS05395 0.12 +1.8
1,137,605 - ABZR87_RS05395 0.12 +1.6
1,137,605 - ABZR87_RS05395 0.12 +1.0
1,137,605 - ABZR87_RS05395 0.12 -1.4
1,137,698 - ABZR87_RS05395 0.24 -0.3
1,137,698 - ABZR87_RS05395 0.24 -0.7
1,137,698 - ABZR87_RS05395 0.24 +0.6
1,137,700 - ABZR87_RS05395 0.24 -1.1
1,137,700 - ABZR87_RS05395 0.24 +0.4
1,137,700 - ABZR87_RS05395 0.24 -1.6
1,137,700 - ABZR87_RS05395 0.24 +0.7
1,137,700 - ABZR87_RS05395 0.24 -0.8
1,137,700 - ABZR87_RS05395 0.24 +0.0
1,137,700 - ABZR87_RS05395 0.24 +0.8
1,137,700 - ABZR87_RS05395 0.24 +0.3
1,137,702 - ABZR87_RS05395 0.25 -1.7
1,137,702 - ABZR87_RS05395 0.25 -1.6
1,137,741 - ABZR87_RS05395 0.29 -2.1
1,137,807 - ABZR87_RS05395 0.38 -1.9
1,137,807 - ABZR87_RS05395 0.38 +0.2
1,137,856 - ABZR87_RS05395 0.44 -1.4
1,137,960 - ABZR87_RS05395 0.57 -0.9
1,137,967 - ABZR87_RS05395 0.57 -1.4
1,137,976 - ABZR87_RS05395 0.59 -0.3
1,137,976 - ABZR87_RS05395 0.59 -0.2
1,138,046 - ABZR87_RS05395 0.67 -0.4
1,138,048 - ABZR87_RS05395 0.68 -0.9
1,138,049 - ABZR87_RS05395 0.68 -0.8
1,138,135 - ABZR87_RS05395 0.78 -1.7
1,138,135 - ABZR87_RS05395 0.78 -0.4
1,138,171 - ABZR87_RS05395 0.83 -0.2
1,138,171 - ABZR87_RS05395 0.83 +1.4
1,138,192 - ABZR87_RS05395 0.85 -1.5
1,138,203 - ABZR87_RS05395 0.87 -2.3
1,138,207 - ABZR87_RS05395 0.87 +0.4
1,138,207 - ABZR87_RS05395 0.87 +0.0
1,138,207 - ABZR87_RS05395 0.87 -1.3
1,138,228 - -3.0
1,138,234 - +0.4
1,138,323 - +0.0
1,138,374 + +0.1
1,138,374 + -0.2
1,138,374 + +0.1
1,138,374 + -0.1
1,138,375 - +1.0
1,138,375 - +0.2
1,138,567 + ABZR87_RS05400 0.11 -0.7
1,138,567 + ABZR87_RS05400 0.11 +0.9
1,138,567 + ABZR87_RS05400 0.11 -0.7
1,138,567 + ABZR87_RS05400 0.11 -3.5
1,138,567 + ABZR87_RS05400 0.11 +0.8
1,138,568 - ABZR87_RS05400 0.11 -0.3
1,138,568 - ABZR87_RS05400 0.11 -0.2
1,138,568 - ABZR87_RS05400 0.11 -1.2
1,138,568 - ABZR87_RS05400 0.11 -0.2
1,138,568 - ABZR87_RS05400 0.11 +3.3
1,138,568 - ABZR87_RS05400 0.11 -0.2
1,138,598 + ABZR87_RS05400 0.13 +0.0
1,138,599 - ABZR87_RS05400 0.13 -1.0
1,138,599 - ABZR87_RS05400 0.13 -0.8
1,138,789 + ABZR87_RS05400 0.21 -0.2
1,138,789 + ABZR87_RS05400 0.21 -0.2
1,138,789 + ABZR87_RS05400 0.21 -2.4
1,138,789 + ABZR87_RS05400 0.21 -1.3
1,138,790 - ABZR87_RS05400 0.21 +0.4
1,138,790 - ABZR87_RS05400 0.21 +0.6
1,138,791 + ABZR87_RS05400 0.21 -0.7
1,138,791 + ABZR87_RS05400 0.21 +0.4
1,138,791 + ABZR87_RS05400 0.21 +0.4
1,138,791 + ABZR87_RS05400 0.21 -0.2
1,138,792 - ABZR87_RS05400 0.21 -1.1
1,138,792 - ABZR87_RS05400 0.21 -0.1
1,138,802 + ABZR87_RS05400 0.21 +0.9
1,138,859 - ABZR87_RS05400 0.24 +0.5
1,138,859 - ABZR87_RS05400 0.24 -0.3
1,138,878 + ABZR87_RS05400 0.25 -0.0
1,138,895 - ABZR87_RS05400 0.25 -1.4
1,138,938 - ABZR87_RS05400 0.27 +0.0
1,138,967 - ABZR87_RS05400 0.28 -0.8
1,139,009 + ABZR87_RS05400 0.30 -1.9
1,139,010 - ABZR87_RS05400 0.30 -0.1
1,139,041 - ABZR87_RS05400 0.32 +1.0
1,139,059 - ABZR87_RS05400 0.32 +0.4
1,139,062 + ABZR87_RS05400 0.32 +0.4
1,139,062 + ABZR87_RS05400 0.32 -1.5
1,139,069 + ABZR87_RS05400 0.33 -0.4
1,139,070 - ABZR87_RS05400 0.33 +0.2
1,139,070 - ABZR87_RS05400 0.33 +0.3
1,139,100 - ABZR87_RS05400 0.34 -1.1
1,139,100 - ABZR87_RS05400 0.34 +0.3
1,139,104 - ABZR87_RS05400 0.34 -2.4
1,139,167 + ABZR87_RS05400 0.37 -1.1
1,139,178 - ABZR87_RS05400 0.37 +0.8
1,139,268 - ABZR87_RS05400 0.41 -0.6
1,139,268 - ABZR87_RS05400 0.41 -2.8
1,139,268 - ABZR87_RS05400 0.41 -0.4
1,139,295 + ABZR87_RS05400 0.42 +1.0
1,139,295 + ABZR87_RS05400 0.42 -2.2
1,139,295 + ABZR87_RS05400 0.42 -0.4
1,139,296 - ABZR87_RS05400 0.42 -0.7
1,139,296 - ABZR87_RS05400 0.42 -1.2

Or see this region's nucleotide sequence