Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04140 and ABZR87_RS04145 are separated by 155 nucleotides ABZR87_RS04145 and ABZR87_RS04150 are separated by 107 nucleotides
ABZR87_RS04140: ABZR87_RS04140 - ABC transporter substrate-binding protein, at 868,415 to 869,563
_RS04140
ABZR87_RS04145: ABZR87_RS04145 - short chain dehydrogenase, at 869,719 to 870,324
_RS04145
ABZR87_RS04150: ABZR87_RS04150 - LysR family transcriptional regulator CrgA, at 870,432 to 871,340
_RS04150
Position (kb) 869
870
871 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 868.842 kb on + strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.843 kb on - strand, within ABZR87_RS04140 at 868.857 kb on + strand, within ABZR87_RS04140 at 868.858 kb on - strand, within ABZR87_RS04140 at 868.858 kb on - strand, within ABZR87_RS04140 at 868.858 kb on - strand, within ABZR87_RS04140 at 868.858 kb on - strand, within ABZR87_RS04140 at 868.900 kb on + strand, within ABZR87_RS04140 at 868.900 kb on + strand, within ABZR87_RS04140 at 868.901 kb on - strand, within ABZR87_RS04140 at 868.972 kb on + strand, within ABZR87_RS04140 at 868.972 kb on + strand, within ABZR87_RS04140 at 868.972 kb on + strand, within ABZR87_RS04140 at 868.972 kb on + strand, within ABZR87_RS04140 at 868.973 kb on - strand, within ABZR87_RS04140 at 869.061 kb on + strand, within ABZR87_RS04140 at 869.061 kb on + strand, within ABZR87_RS04140 at 869.061 kb on + strand, within ABZR87_RS04140 at 869.062 kb on - strand, within ABZR87_RS04140 at 869.062 kb on - strand, within ABZR87_RS04140 at 869.096 kb on + strand, within ABZR87_RS04140 at 869.096 kb on + strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.097 kb on - strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.379 kb on + strand, within ABZR87_RS04140 at 869.380 kb on - strand, within ABZR87_RS04140 at 869.555 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.648 kb on + strand at 869.648 kb on + strand at 869.648 kb on + strand at 869.649 kb on - strand at 869.649 kb on - strand at 869.649 kb on - strand at 869.649 kb on - strand at 869.683 kb on - strand at 869.732 kb on + strand at 869.732 kb on + strand at 869.732 kb on + strand at 869.733 kb on - strand at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.252 kb on + strand, within ABZR87_RS04145 at 870.253 kb on - strand, within ABZR87_RS04145 at 870.253 kb on - strand, within ABZR87_RS04145 at 870.362 kb on - strand at 870.388 kb on - strand at 870.398 kb on + strand at 870.399 kb on - strand at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.627 kb on + strand, within ABZR87_RS04150 at 870.627 kb on + strand, within ABZR87_RS04150 at 870.627 kb on + strand, within ABZR87_RS04150 at 870.628 kb on - strand, within ABZR87_RS04150 at 870.628 kb on - strand, within ABZR87_RS04150 at 870.628 kb on - strand, within ABZR87_RS04150 at 870.628 kb on - strand, within ABZR87_RS04150 at 870.912 kb on + strand, within ABZR87_RS04150 at 870.912 kb on + strand, within ABZR87_RS04150 at 870.942 kb on + strand, within ABZR87_RS04150 at 870.942 kb on + strand, within ABZR87_RS04150 at 870.942 kb on + strand, within ABZR87_RS04150 at 870.943 kb on - strand, within ABZR87_RS04150 at 870.943 kb on - strand, within ABZR87_RS04150 at 870.943 kb on - strand, within ABZR87_RS04150 at 870.954 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.210 kb on - strand, within ABZR87_RS04150 at 871.242 kb on + strand, within ABZR87_RS04150 at 871.243 kb on - strand, within ABZR87_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 868,842 + ABZR87_RS04140 0.37 -0.2 868,843 - ABZR87_RS04140 0.37 -0.8 868,843 - ABZR87_RS04140 0.37 -0.3 868,843 - ABZR87_RS04140 0.37 -0.3 868,843 - ABZR87_RS04140 0.37 -1.4 868,843 - ABZR87_RS04140 0.37 -0.9 868,857 + ABZR87_RS04140 0.38 -0.3 868,858 - ABZR87_RS04140 0.39 +0.6 868,858 - ABZR87_RS04140 0.39 -1.5 868,858 - ABZR87_RS04140 0.39 -0.2 868,858 - ABZR87_RS04140 0.39 +0.0 868,900 + ABZR87_RS04140 0.42 -1.2 868,900 + ABZR87_RS04140 0.42 -0.8 868,901 - ABZR87_RS04140 0.42 +0.5 868,972 + ABZR87_RS04140 0.48 +1.0 868,972 + ABZR87_RS04140 0.48 -0.3 868,972 + ABZR87_RS04140 0.48 -1.4 868,972 + ABZR87_RS04140 0.48 -0.3 868,973 - ABZR87_RS04140 0.49 -1.7 869,061 + ABZR87_RS04140 0.56 -0.6 869,061 + ABZR87_RS04140 0.56 -3.4 869,061 + ABZR87_RS04140 0.56 +0.9 869,062 - ABZR87_RS04140 0.56 +1.1 869,062 - ABZR87_RS04140 0.56 -0.3 869,096 + ABZR87_RS04140 0.59 +1.1 869,096 + ABZR87_RS04140 0.59 +0.2 869,097 - ABZR87_RS04140 0.59 +0.1 869,097 - ABZR87_RS04140 0.59 -0.0 869,097 - ABZR87_RS04140 0.59 +0.6 869,097 - ABZR87_RS04140 0.59 -0.1 869,097 - ABZR87_RS04140 0.59 +0.3 869,379 + ABZR87_RS04140 0.84 -0.8 869,379 + ABZR87_RS04140 0.84 +0.5 869,379 + ABZR87_RS04140 0.84 +1.5 869,379 + ABZR87_RS04140 0.84 -1.0 869,379 + ABZR87_RS04140 0.84 -1.0 869,379 + ABZR87_RS04140 0.84 +2.5 869,379 + ABZR87_RS04140 0.84 -0.2 869,380 - ABZR87_RS04140 0.84 +0.2 869,555 + +0.7 869,578 + +0.4 869,578 + -1.4 869,578 + +0.3 869,578 + +0.5 869,578 + +3.8 869,579 - +0.4 869,579 - -0.9 869,579 - -1.3 869,579 - +0.2 869,579 - -1.2 869,579 - +0.7 869,648 + +2.2 869,648 + +0.3 869,648 + +0.7 869,649 - -0.3 869,649 - +0.9 869,649 - +0.7 869,649 - +0.2 869,683 - +0.7 869,732 + -0.8 869,732 + +1.5 869,732 + -2.5 869,733 - +0.3 869,828 + ABZR87_RS04145 0.18 -0.2 869,828 + ABZR87_RS04145 0.18 +1.1 869,828 + ABZR87_RS04145 0.18 +0.5 869,828 + ABZR87_RS04145 0.18 +0.5 869,828 + ABZR87_RS04145 0.18 +1.8 869,828 + ABZR87_RS04145 0.18 -0.2 869,828 + ABZR87_RS04145 0.18 +0.4 869,829 - ABZR87_RS04145 0.18 -1.2 869,829 - ABZR87_RS04145 0.18 -0.8 869,829 - ABZR87_RS04145 0.18 -1.1 869,829 - ABZR87_RS04145 0.18 -0.5 869,829 - ABZR87_RS04145 0.18 -0.0 870,020 + ABZR87_RS04145 0.50 -1.3 870,020 + ABZR87_RS04145 0.50 -0.6 870,020 + ABZR87_RS04145 0.50 -2.0 870,020 + ABZR87_RS04145 0.50 +0.5 870,021 - ABZR87_RS04145 0.50 -0.8 870,021 - ABZR87_RS04145 0.50 +1.2 870,021 - ABZR87_RS04145 0.50 -2.3 870,021 - ABZR87_RS04145 0.50 -0.4 870,021 - ABZR87_RS04145 0.50 -0.9 870,252 + ABZR87_RS04145 0.88 +0.4 870,253 - ABZR87_RS04145 0.88 -2.4 870,253 - ABZR87_RS04145 0.88 +0.9 870,362 - +0.2 870,388 - +0.0 870,398 + +1.8 870,399 - -0.2 870,537 + ABZR87_RS04150 0.12 -0.0 870,537 + ABZR87_RS04150 0.12 -0.4 870,537 + ABZR87_RS04150 0.12 -0.6 870,537 + ABZR87_RS04150 0.12 -0.2 870,537 + ABZR87_RS04150 0.12 +1.9 870,537 + ABZR87_RS04150 0.12 -2.0 870,537 + ABZR87_RS04150 0.12 +1.1 870,537 + ABZR87_RS04150 0.12 -0.2 870,537 + ABZR87_RS04150 0.12 +0.0 870,537 + ABZR87_RS04150 0.12 -0.0 870,538 - ABZR87_RS04150 0.12 +0.6 870,538 - ABZR87_RS04150 0.12 -0.3 870,538 - ABZR87_RS04150 0.12 +1.2 870,538 - ABZR87_RS04150 0.12 +3.0 870,538 - ABZR87_RS04150 0.12 +0.7 870,538 - ABZR87_RS04150 0.12 -0.6 870,538 - ABZR87_RS04150 0.12 +2.0 870,627 + ABZR87_RS04150 0.21 +0.6 870,627 + ABZR87_RS04150 0.21 +0.5 870,627 + ABZR87_RS04150 0.21 -0.2 870,628 - ABZR87_RS04150 0.22 -0.7 870,628 - ABZR87_RS04150 0.22 -1.0 870,628 - ABZR87_RS04150 0.22 +0.1 870,628 - ABZR87_RS04150 0.22 +0.3 870,912 + ABZR87_RS04150 0.53 -1.4 870,912 + ABZR87_RS04150 0.53 -0.3 870,942 + ABZR87_RS04150 0.56 -1.4 870,942 + ABZR87_RS04150 0.56 -2.3 870,942 + ABZR87_RS04150 0.56 +0.5 870,943 - ABZR87_RS04150 0.56 +1.1 870,943 - ABZR87_RS04150 0.56 +0.3 870,943 - ABZR87_RS04150 0.56 -1.0 870,954 + ABZR87_RS04150 0.57 -0.2 871,209 + ABZR87_RS04150 0.85 -2.6 871,209 + ABZR87_RS04150 0.85 -0.7 871,209 + ABZR87_RS04150 0.85 -2.4 871,209 + ABZR87_RS04150 0.85 -0.0 871,209 + ABZR87_RS04150 0.85 +0.1 871,209 + ABZR87_RS04150 0.85 +0.9 871,209 + ABZR87_RS04150 0.85 +0.2 871,209 + ABZR87_RS04150 0.85 +0.8 871,209 + ABZR87_RS04150 0.85 +0.8 871,210 - ABZR87_RS04150 0.86 -0.8 871,242 + ABZR87_RS04150 0.89 -2.9 871,243 - ABZR87_RS04150 0.89 +0.4
Or see this region's nucleotide sequence