Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03905

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03900 and ABZR87_RS03905 are separated by 621 nucleotidesABZR87_RS03905 and ABZR87_RS03910 are separated by 7 nucleotides ABZR87_RS03900: ABZR87_RS03900 - glycerate kinase, at 805,619 to 806,938 _RS03900 ABZR87_RS03905: ABZR87_RS03905 - pyruvate kinase, at 807,560 to 809,038 _RS03905 ABZR87_RS03910: ABZR87_RS03910 - oxygen-independent coproporphyrinogen III oxidase, at 809,046 to 810,530 _RS03910 Position (kb) 807 808 809 810Strain fitness (log2 ratio) -2 -1 0 1 2at 806.633 kb on + strand, within ABZR87_RS03900at 806.639 kb on - strand, within ABZR87_RS03900at 806.728 kb on + strand, within ABZR87_RS03900at 806.846 kb on + strandat 806.847 kb on - strandat 806.899 kb on + strandat 806.900 kb on - strandat 806.900 kb on - strandat 806.900 kb on - strandat 806.900 kb on - strandat 806.929 kb on + strandat 806.930 kb on - strandat 807.171 kb on + strandat 807.171 kb on + strandat 807.302 kb on + strandat 807.334 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.597 kb on + strandat 807.598 kb on - strandat 807.598 kb on - strandat 807.708 kb on - strand, within ABZR87_RS03905at 807.708 kb on - strand, within ABZR87_RS03905at 807.902 kb on + strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 808.458 kb on - strand, within ABZR87_RS03905at 808.572 kb on - strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.685 kb on + strand, within ABZR87_RS03905at 808.686 kb on - strand, within ABZR87_RS03905at 808.686 kb on - strand, within ABZR87_RS03905at 808.686 kb on - strand, within ABZR87_RS03905at 809.419 kb on + strand, within ABZR87_RS03910at 809.419 kb on + strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.420 kb on - strand, within ABZR87_RS03910at 809.422 kb on + strand, within ABZR87_RS03910at 809.423 kb on - strand, within ABZR87_RS03910at 809.423 kb on - strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.452 kb on + strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.453 kb on - strand, within ABZR87_RS03910at 809.522 kb on - strand, within ABZR87_RS03910at 809.600 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.608 kb on + strand, within ABZR87_RS03910at 809.609 kb on + strand, within ABZR87_RS03910at 809.609 kb on - strand, within ABZR87_RS03910at 809.609 kb on - strand, within ABZR87_RS03910at 809.614 kb on + strand, within ABZR87_RS03910at 809.614 kb on + strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.615 kb on - strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.734 kb on + strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.735 kb on - strand, within ABZR87_RS03910at 809.741 kb on - strand, within ABZR87_RS03910at 809.741 kb on - strand, within ABZR87_RS03910at 809.824 kb on + strand, within ABZR87_RS03910at 809.824 kb on + strand, within ABZR87_RS03910at 809.825 kb on - strand, within ABZR87_RS03910at 809.825 kb on - strand, within ABZR87_RS03910at 809.825 kb on - strand, within ABZR87_RS03910

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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806,633 + ABZR87_RS03900 0.77 +0.6
806,639 - ABZR87_RS03900 0.77 +0.7
806,728 + ABZR87_RS03900 0.84 -0.5
806,846 + +0.6
806,847 - -2.7
806,899 + -1.4
806,900 - -0.4
806,900 - -0.3
806,900 - +0.1
806,900 - +1.0
806,929 + -1.2
806,930 - -1.0
807,171 + -1.4
807,171 + +0.0
807,302 + -0.5
807,334 + +0.3
807,534 + -0.4
807,534 + +0.2
807,534 + +0.6
807,534 + +0.3
807,534 + -0.2
807,534 + -1.4
807,534 + -0.9
807,534 + +0.4
807,534 + -0.4
807,535 - +0.8
807,535 - -0.8
807,535 - +0.4
807,535 - +0.0
807,535 - +0.3
807,535 - -1.6
807,535 - +0.9
807,597 + +1.8
807,598 - +0.0
807,598 - +0.1
807,708 - ABZR87_RS03905 0.10 -0.4
807,708 - ABZR87_RS03905 0.10 +0.1
807,902 + ABZR87_RS03905 0.23 -1.3
807,903 - ABZR87_RS03905 0.23 -0.7
807,903 - ABZR87_RS03905 0.23 +0.9
807,903 - ABZR87_RS03905 0.23 -1.3
807,903 - ABZR87_RS03905 0.23 -0.4
808,458 - ABZR87_RS03905 0.61 -0.5
808,572 - ABZR87_RS03905 0.68 +1.1
808,685 + ABZR87_RS03905 0.76 -0.5
808,685 + ABZR87_RS03905 0.76 +0.1
808,685 + ABZR87_RS03905 0.76 -0.6
808,685 + ABZR87_RS03905 0.76 -0.6
808,686 - ABZR87_RS03905 0.76 -0.2
808,686 - ABZR87_RS03905 0.76 +0.1
808,686 - ABZR87_RS03905 0.76 +0.5
809,419 + ABZR87_RS03910 0.25 -0.4
809,419 + ABZR87_RS03910 0.25 +0.7
809,420 - ABZR87_RS03910 0.25 -2.4
809,420 - ABZR87_RS03910 0.25 -0.2
809,420 - ABZR87_RS03910 0.25 +0.1
809,420 - ABZR87_RS03910 0.25 -2.3
809,420 - ABZR87_RS03910 0.25 +0.5
809,422 + ABZR87_RS03910 0.25 +0.4
809,423 - ABZR87_RS03910 0.25 -0.1
809,423 - ABZR87_RS03910 0.25 -0.2
809,452 + ABZR87_RS03910 0.27 -0.5
809,452 + ABZR87_RS03910 0.27 -2.0
809,452 + ABZR87_RS03910 0.27 +0.7
809,452 + ABZR87_RS03910 0.27 -0.3
809,452 + ABZR87_RS03910 0.27 +1.0
809,452 + ABZR87_RS03910 0.27 -0.1
809,453 - ABZR87_RS03910 0.27 -0.2
809,453 - ABZR87_RS03910 0.27 +0.4
809,453 - ABZR87_RS03910 0.27 -0.9
809,453 - ABZR87_RS03910 0.27 +0.3
809,453 - ABZR87_RS03910 0.27 -0.2
809,453 - ABZR87_RS03910 0.27 -0.3
809,453 - ABZR87_RS03910 0.27 -0.2
809,522 - ABZR87_RS03910 0.32 +0.7
809,600 + ABZR87_RS03910 0.37 +1.3
809,608 + ABZR87_RS03910 0.38 -1.2
809,608 + ABZR87_RS03910 0.38 +0.3
809,608 + ABZR87_RS03910 0.38 +0.9
809,608 + ABZR87_RS03910 0.38 +0.2
809,609 + ABZR87_RS03910 0.38 +2.4
809,609 - ABZR87_RS03910 0.38 +0.1
809,609 - ABZR87_RS03910 0.38 -0.5
809,614 + ABZR87_RS03910 0.38 +0.5
809,614 + ABZR87_RS03910 0.38 +0.0
809,615 - ABZR87_RS03910 0.38 +0.9
809,615 - ABZR87_RS03910 0.38 +0.1
809,615 - ABZR87_RS03910 0.38 +0.4
809,615 - ABZR87_RS03910 0.38 +1.7
809,615 - ABZR87_RS03910 0.38 -1.0
809,734 + ABZR87_RS03910 0.46 -2.3
809,734 + ABZR87_RS03910 0.46 +0.7
809,734 + ABZR87_RS03910 0.46 +0.5
809,734 + ABZR87_RS03910 0.46 +0.2
809,734 + ABZR87_RS03910 0.46 -0.3
809,735 - ABZR87_RS03910 0.46 +1.2
809,735 - ABZR87_RS03910 0.46 -0.1
809,735 - ABZR87_RS03910 0.46 +0.5
809,735 - ABZR87_RS03910 0.46 +0.7
809,741 - ABZR87_RS03910 0.47 -0.4
809,741 - ABZR87_RS03910 0.47 -1.4
809,824 + ABZR87_RS03910 0.52 +0.7
809,824 + ABZR87_RS03910 0.52 -0.2
809,825 - ABZR87_RS03910 0.52 +0.6
809,825 - ABZR87_RS03910 0.52 -0.6
809,825 - ABZR87_RS03910 0.52 -1.0

Or see this region's nucleotide sequence