Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03770 and ABZR87_RS03775 are separated by 16 nucleotides ABZR87_RS03775 and ABZR87_RS03780 are separated by 18 nucleotides ABZR87_RS03780 and ABZR87_RS03785 are separated by 10 nucleotides ABZR87_RS03785 and ABZR87_RS03790 are separated by 171 nucleotides
ABZR87_RS03770: ABZR87_RS03770 - DsrE family protein, at 782,898 to 783,353
_RS03770
ABZR87_RS03775: ABZR87_RS03775 - thiosulfate oxidation carrier complex protein SoxZ, at 783,370 to 783,681
_RS03775
ABZR87_RS03780: ABZR87_RS03780 - thiosulfate oxidation carrier protein SoxY, at 783,700 to 784,170
_RS03780
ABZR87_RS03785: ABZR87_RS03785 - c-type cytochrome, at 784,181 to 784,528
_RS03785
ABZR87_RS03790: ABZR87_RS03790 - EamA family transporter, at 784,700 to 785,587
_RS03790
Position (kb) 784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 783.235 kb on + strand, within ABZR87_RS03770 at 783.235 kb on + strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.236 kb on - strand, within ABZR87_RS03770 at 783.247 kb on + strand, within ABZR87_RS03770 at 783.247 kb on + strand, within ABZR87_RS03770 at 783.248 kb on - strand, within ABZR87_RS03770 at 783.248 kb on - strand, within ABZR87_RS03770 at 783.371 kb on + strand at 783.371 kb on + strand at 783.378 kb on + strand at 783.378 kb on + strand at 783.378 kb on + strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.379 kb on - strand at 783.780 kb on - strand, within ABZR87_RS03780 at 783.780 kb on - strand, within ABZR87_RS03780 at 784.341 kb on + strand, within ABZR87_RS03785 at 784.341 kb on + strand, within ABZR87_RS03785 at 784.341 kb on + strand, within ABZR87_RS03785 at 784.341 kb on + strand, within ABZR87_RS03785 at 784.342 kb on - strand, within ABZR87_RS03785 at 784.363 kb on - strand, within ABZR87_RS03785 at 784.363 kb on - strand, within ABZR87_RS03785 at 784.594 kb on + strand at 784.595 kb on - strand at 784.595 kb on - strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.620 kb on + strand at 784.621 kb on - strand at 784.621 kb on - strand at 784.621 kb on - strand at 784.621 kb on - strand at 784.662 kb on - strand at 784.881 kb on + strand, within ABZR87_RS03790 at 784.911 kb on + strand, within ABZR87_RS03790 at 784.911 kb on + strand, within ABZR87_RS03790 at 784.911 kb on + strand, within ABZR87_RS03790 at 784.912 kb on - strand, within ABZR87_RS03790 at 784.941 kb on + strand, within ABZR87_RS03790 at 784.941 kb on + strand, within ABZR87_RS03790 at 784.941 kb on + strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.942 kb on - strand, within ABZR87_RS03790 at 784.984 kb on + strand, within ABZR87_RS03790 at 784.985 kb on - strand, within ABZR87_RS03790 at 785.016 kb on + strand, within ABZR87_RS03790 at 785.016 kb on + strand, within ABZR87_RS03790 at 785.016 kb on + strand, within ABZR87_RS03790 at 785.017 kb on - strand, within ABZR87_RS03790 at 785.017 kb on - strand, within ABZR87_RS03790 at 785.017 kb on - strand, within ABZR87_RS03790 at 785.290 kb on + strand, within ABZR87_RS03790 at 785.290 kb on + strand, within ABZR87_RS03790 at 785.290 kb on + strand, within ABZR87_RS03790 at 785.291 kb on - strand, within ABZR87_RS03790 at 785.291 kb on - strand, within ABZR87_RS03790 at 785.291 kb on - strand, within ABZR87_RS03790 at 785.291 kb on - strand, within ABZR87_RS03790 at 785.291 kb on - strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.346 kb on + strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.347 kb on - strand, within ABZR87_RS03790 at 785.397 kb on + strand, within ABZR87_RS03790 at 785.398 kb on - strand, within ABZR87_RS03790
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 783,235 + ABZR87_RS03770 0.74 -0.5 783,235 + ABZR87_RS03770 0.74 -1.2 783,236 - ABZR87_RS03770 0.74 -0.4 783,236 - ABZR87_RS03770 0.74 -1.4 783,236 - ABZR87_RS03770 0.74 +1.6 783,236 - ABZR87_RS03770 0.74 +1.3 783,236 - ABZR87_RS03770 0.74 +0.5 783,236 - ABZR87_RS03770 0.74 -1.2 783,247 + ABZR87_RS03770 0.77 +0.8 783,247 + ABZR87_RS03770 0.77 +0.1 783,248 - ABZR87_RS03770 0.77 -0.0 783,248 - ABZR87_RS03770 0.77 -1.5 783,371 + -0.7 783,371 + +0.3 783,378 + +1.9 783,378 + -0.6 783,378 + -0.6 783,379 - +0.1 783,379 - +0.7 783,379 - +0.3 783,379 - -0.7 783,379 - +2.2 783,379 - +1.6 783,780 - ABZR87_RS03780 0.17 -0.1 783,780 - ABZR87_RS03780 0.17 +0.4 784,341 + ABZR87_RS03785 0.46 -1.3 784,341 + ABZR87_RS03785 0.46 -0.3 784,341 + ABZR87_RS03785 0.46 -1.8 784,341 + ABZR87_RS03785 0.46 +1.4 784,342 - ABZR87_RS03785 0.46 -2.6 784,363 - ABZR87_RS03785 0.52 -2.4 784,363 - ABZR87_RS03785 0.52 -0.2 784,594 + +1.3 784,595 - +0.9 784,595 - -3.4 784,620 + +0.9 784,620 + +0.5 784,620 + +0.8 784,620 + -0.5 784,620 + +0.3 784,620 + -0.4 784,620 + -0.3 784,620 + -0.3 784,621 - -0.2 784,621 - +0.5 784,621 - -0.0 784,621 - -1.0 784,662 - -0.9 784,881 + ABZR87_RS03790 0.20 -1.3 784,911 + ABZR87_RS03790 0.24 -0.7 784,911 + ABZR87_RS03790 0.24 +1.3 784,911 + ABZR87_RS03790 0.24 -1.9 784,912 - ABZR87_RS03790 0.24 -0.9 784,941 + ABZR87_RS03790 0.27 +0.3 784,941 + ABZR87_RS03790 0.27 +0.4 784,941 + ABZR87_RS03790 0.27 -1.1 784,942 - ABZR87_RS03790 0.27 +1.0 784,942 - ABZR87_RS03790 0.27 -2.2 784,942 - ABZR87_RS03790 0.27 +0.2 784,942 - ABZR87_RS03790 0.27 -0.2 784,942 - ABZR87_RS03790 0.27 +1.7 784,942 - ABZR87_RS03790 0.27 -0.4 784,942 - ABZR87_RS03790 0.27 +0.0 784,942 - ABZR87_RS03790 0.27 +0.1 784,942 - ABZR87_RS03790 0.27 -2.1 784,984 + ABZR87_RS03790 0.32 +0.6 784,985 - ABZR87_RS03790 0.32 +0.6 785,016 + ABZR87_RS03790 0.36 -0.4 785,016 + ABZR87_RS03790 0.36 -0.3 785,016 + ABZR87_RS03790 0.36 +0.0 785,017 - ABZR87_RS03790 0.36 -0.0 785,017 - ABZR87_RS03790 0.36 -1.9 785,017 - ABZR87_RS03790 0.36 +0.1 785,290 + ABZR87_RS03790 0.66 -1.1 785,290 + ABZR87_RS03790 0.66 -0.4 785,290 + ABZR87_RS03790 0.66 +0.6 785,291 - ABZR87_RS03790 0.67 -1.5 785,291 - ABZR87_RS03790 0.67 -0.7 785,291 - ABZR87_RS03790 0.67 +4.0 785,291 - ABZR87_RS03790 0.67 -0.0 785,291 - ABZR87_RS03790 0.67 +0.8 785,346 + ABZR87_RS03790 0.73 +0.2 785,346 + ABZR87_RS03790 0.73 +1.3 785,346 + ABZR87_RS03790 0.73 +1.5 785,346 + ABZR87_RS03790 0.73 -0.0 785,346 + ABZR87_RS03790 0.73 -0.0 785,346 + ABZR87_RS03790 0.73 -0.0 785,346 + ABZR87_RS03790 0.73 -0.4 785,346 + ABZR87_RS03790 0.73 +1.0 785,346 + ABZR87_RS03790 0.73 -0.6 785,346 + ABZR87_RS03790 0.73 +0.2 785,346 + ABZR87_RS03790 0.73 -0.5 785,346 + ABZR87_RS03790 0.73 +0.9 785,346 + ABZR87_RS03790 0.73 +1.0 785,346 + ABZR87_RS03790 0.73 -1.0 785,346 + ABZR87_RS03790 0.73 -0.7 785,346 + ABZR87_RS03790 0.73 +0.2 785,346 + ABZR87_RS03790 0.73 +0.8 785,346 + ABZR87_RS03790 0.73 -0.8 785,346 + ABZR87_RS03790 0.73 +0.0 785,346 + ABZR87_RS03790 0.73 -0.4 785,346 + ABZR87_RS03790 0.73 -1.6 785,346 + ABZR87_RS03790 0.73 +3.0 785,347 - ABZR87_RS03790 0.73 +0.2 785,347 - ABZR87_RS03790 0.73 -0.4 785,347 - ABZR87_RS03790 0.73 +1.4 785,347 - ABZR87_RS03790 0.73 -0.4 785,347 - ABZR87_RS03790 0.73 -0.2 785,347 - ABZR87_RS03790 0.73 -0.3 785,347 - ABZR87_RS03790 0.73 +0.7 785,347 - ABZR87_RS03790 0.73 -0.8 785,347 - ABZR87_RS03790 0.73 -1.0 785,347 - ABZR87_RS03790 0.73 +0.0 785,347 - ABZR87_RS03790 0.73 -1.3 785,347 - ABZR87_RS03790 0.73 +1.4 785,347 - ABZR87_RS03790 0.73 -1.5 785,397 + ABZR87_RS03790 0.78 +0.3 785,398 - ABZR87_RS03790 0.79 +0.0
Or see this region's nucleotide sequence