Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03145 and ABZR87_RS03150 are separated by 287 nucleotides ABZR87_RS03150 and ABZR87_RS03155 are separated by 280 nucleotides
ABZR87_RS03145: ABZR87_RS03145 - MurR/RpiR family transcriptional regulator, at 660,457 to 661,320
_RS03145
ABZR87_RS03150: ABZR87_RS03150 - porin, at 661,608 to 662,654
_RS03150
ABZR87_RS03155: ABZR87_RS03155 - mechanosensitive ion channel family protein, at 662,935 to 665,208
_RS03155
Position (kb) 661
662
663 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 660.714 kb on - strand, within ABZR87_RS03145 at 660.734 kb on + strand, within ABZR87_RS03145 at 660.734 kb on + strand, within ABZR87_RS03145 at 660.734 kb on + strand, within ABZR87_RS03145 at 660.734 kb on + strand, within ABZR87_RS03145 at 660.734 kb on + strand, within ABZR87_RS03145 at 660.735 kb on - strand, within ABZR87_RS03145 at 660.735 kb on - strand, within ABZR87_RS03145 at 660.735 kb on - strand, within ABZR87_RS03145 at 660.825 kb on - strand, within ABZR87_RS03145 at 660.905 kb on + strand, within ABZR87_RS03145 at 660.905 kb on + strand, within ABZR87_RS03145 at 660.905 kb on + strand, within ABZR87_RS03145 at 660.906 kb on - strand, within ABZR87_RS03145 at 661.327 kb on + strand at 661.327 kb on + strand at 661.327 kb on + strand at 661.327 kb on + strand at 661.327 kb on + strand at 661.327 kb on + strand at 661.327 kb on + strand at 661.327 kb on + strand at 661.328 kb on - strand at 661.328 kb on - strand at 661.328 kb on - strand at 661.328 kb on - strand at 661.328 kb on - strand at 661.363 kb on + strand at 661.364 kb on - strand at 661.417 kb on + strand at 661.418 kb on - strand at 661.418 kb on - strand at 661.502 kb on + strand at 661.502 kb on + strand at 661.503 kb on - strand at 661.515 kb on + strand at 661.515 kb on + strand at 661.516 kb on - strand at 661.516 kb on - strand at 661.516 kb on - strand at 661.516 kb on - strand at 661.588 kb on + strand at 661.596 kb on + strand at 661.596 kb on + strand at 661.596 kb on + strand at 661.596 kb on + strand at 661.596 kb on + strand at 661.596 kb on + strand at 661.597 kb on - strand at 661.597 kb on - strand at 661.597 kb on - strand at 661.597 kb on - strand at 661.597 kb on - strand at 661.597 kb on - strand at 661.597 kb on - strand at 661.597 kb on - strand at 661.704 kb on + strand at 661.704 kb on + strand at 661.705 kb on - strand at 661.731 kb on + strand, within ABZR87_RS03150 at 661.732 kb on - strand, within ABZR87_RS03150 at 661.732 kb on - strand, within ABZR87_RS03150 at 661.785 kb on + strand, within ABZR87_RS03150 at 661.785 kb on + strand, within ABZR87_RS03150 at 661.786 kb on - strand, within ABZR87_RS03150 at 661.788 kb on + strand, within ABZR87_RS03150 at 661.788 kb on + strand, within ABZR87_RS03150 at 661.788 kb on + strand, within ABZR87_RS03150 at 661.789 kb on - strand, within ABZR87_RS03150 at 661.789 kb on - strand, within ABZR87_RS03150 at 661.920 kb on + strand, within ABZR87_RS03150 at 661.920 kb on + strand, within ABZR87_RS03150 at 661.968 kb on + strand, within ABZR87_RS03150 at 661.968 kb on + strand, within ABZR87_RS03150 at 661.968 kb on + strand, within ABZR87_RS03150 at 661.968 kb on + strand, within ABZR87_RS03150 at 661.968 kb on + strand, within ABZR87_RS03150 at 661.968 kb on + strand, within ABZR87_RS03150 at 661.968 kb on + strand, within ABZR87_RS03150 at 661.968 kb on + strand, within ABZR87_RS03150 at 661.969 kb on - strand, within ABZR87_RS03150 at 661.969 kb on - strand, within ABZR87_RS03150 at 661.969 kb on - strand, within ABZR87_RS03150 at 661.969 kb on - strand, within ABZR87_RS03150 at 661.969 kb on - strand, within ABZR87_RS03150 at 661.969 kb on - strand, within ABZR87_RS03150 at 661.969 kb on - strand, within ABZR87_RS03150 at 661.969 kb on - strand, within ABZR87_RS03150 at 662.130 kb on + strand, within ABZR87_RS03150 at 662.130 kb on + strand, within ABZR87_RS03150 at 662.130 kb on + strand, within ABZR87_RS03150 at 662.130 kb on + strand, within ABZR87_RS03150 at 662.130 kb on + strand, within ABZR87_RS03150 at 662.130 kb on + strand, within ABZR87_RS03150 at 662.130 kb on + strand, within ABZR87_RS03150 at 662.131 kb on - strand, within ABZR87_RS03150 at 662.131 kb on - strand, within ABZR87_RS03150 at 662.131 kb on - strand, within ABZR87_RS03150 at 662.131 kb on - strand, within ABZR87_RS03150 at 662.211 kb on + strand, within ABZR87_RS03150 at 662.211 kb on + strand, within ABZR87_RS03150 at 662.211 kb on + strand, within ABZR87_RS03150 at 662.211 kb on + strand, within ABZR87_RS03150 at 662.211 kb on + strand, within ABZR87_RS03150 at 662.211 kb on + strand, within ABZR87_RS03150 at 662.211 kb on + strand, within ABZR87_RS03150 at 662.212 kb on - strand, within ABZR87_RS03150 at 662.212 kb on - strand, within ABZR87_RS03150 at 662.212 kb on - strand, within ABZR87_RS03150 at 662.232 kb on + strand, within ABZR87_RS03150 at 662.232 kb on + strand, within ABZR87_RS03150 at 662.233 kb on - strand, within ABZR87_RS03150 at 662.233 kb on - strand, within ABZR87_RS03150 at 662.358 kb on + strand, within ABZR87_RS03150 at 662.358 kb on + strand, within ABZR87_RS03150 at 662.359 kb on - strand, within ABZR87_RS03150 at 662.359 kb on - strand, within ABZR87_RS03150 at 662.359 kb on - strand, within ABZR87_RS03150 at 662.359 kb on - strand, within ABZR87_RS03150 at 662.359 kb on - strand, within ABZR87_RS03150 at 662.367 kb on + strand, within ABZR87_RS03150 at 662.436 kb on + strand, within ABZR87_RS03150 at 662.436 kb on + strand, within ABZR87_RS03150 at 662.436 kb on + strand, within ABZR87_RS03150 at 662.436 kb on + strand, within ABZR87_RS03150 at 662.437 kb on - strand, within ABZR87_RS03150 at 662.437 kb on - strand, within ABZR87_RS03150 at 662.437 kb on - strand, within ABZR87_RS03150 at 662.437 kb on - strand, within ABZR87_RS03150 at 662.437 kb on - strand, within ABZR87_RS03150 at 662.437 kb on - strand, within ABZR87_RS03150 at 662.437 kb on - strand, within ABZR87_RS03150 at 662.493 kb on + strand, within ABZR87_RS03150 at 662.494 kb on - strand, within ABZR87_RS03150 at 662.494 kb on - strand, within ABZR87_RS03150 at 662.494 kb on - strand, within ABZR87_RS03150 at 662.503 kb on - strand, within ABZR87_RS03150 at 662.517 kb on + strand, within ABZR87_RS03150 at 662.517 kb on + strand, within ABZR87_RS03150 at 662.517 kb on + strand, within ABZR87_RS03150 at 662.517 kb on + strand, within ABZR87_RS03150 at 662.517 kb on + strand, within ABZR87_RS03150 at 662.518 kb on - strand, within ABZR87_RS03150 at 662.518 kb on - strand, within ABZR87_RS03150 at 662.518 kb on - strand, within ABZR87_RS03150 at 662.518 kb on - strand, within ABZR87_RS03150 at 662.518 kb on - strand, within ABZR87_RS03150 at 662.518 kb on - strand, within ABZR87_RS03150 at 662.544 kb on + strand, within ABZR87_RS03150 at 662.544 kb on + strand, within ABZR87_RS03150 at 662.544 kb on + strand, within ABZR87_RS03150 at 662.544 kb on + strand, within ABZR87_RS03150 at 662.559 kb on + strand at 662.559 kb on + strand at 662.559 kb on + strand at 662.560 kb on - strand at 662.652 kb on + strand at 662.652 kb on + strand at 662.653 kb on - strand at 662.720 kb on + strand at 662.721 kb on - strand at 662.721 kb on - strand at 662.721 kb on - strand at 662.721 kb on - strand at 662.721 kb on - strand at 662.743 kb on - strand at 662.743 kb on - strand at 662.809 kb on - strand at 662.809 kb on - strand at 662.859 kb on - strand at 662.859 kb on - strand at 662.908 kb on + strand at 662.971 kb on - strand at 663.087 kb on + strand at 663.087 kb on + strand at 663.087 kb on + strand at 663.088 kb on - strand at 663.180 kb on - strand, within ABZR87_RS03155 at 663.224 kb on + strand, within ABZR87_RS03155 at 663.225 kb on - strand, within ABZR87_RS03155 at 663.335 kb on + strand, within ABZR87_RS03155 at 663.336 kb on - strand, within ABZR87_RS03155 at 663.336 kb on - strand, within ABZR87_RS03155
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 660,714 - ABZR87_RS03145 0.30 +0.3 660,734 + ABZR87_RS03145 0.32 -0.3 660,734 + ABZR87_RS03145 0.32 -1.2 660,734 + ABZR87_RS03145 0.32 -0.1 660,734 + ABZR87_RS03145 0.32 +1.6 660,734 + ABZR87_RS03145 0.32 -0.8 660,735 - ABZR87_RS03145 0.32 -0.2 660,735 - ABZR87_RS03145 0.32 -0.6 660,735 - ABZR87_RS03145 0.32 -0.7 660,825 - ABZR87_RS03145 0.43 +0.8 660,905 + ABZR87_RS03145 0.52 +0.7 660,905 + ABZR87_RS03145 0.52 -0.5 660,905 + ABZR87_RS03145 0.52 -0.7 660,906 - ABZR87_RS03145 0.52 +0.3 661,327 + +0.3 661,327 + +1.0 661,327 + -0.5 661,327 + -0.6 661,327 + -0.3 661,327 + -0.3 661,327 + -1.5 661,327 + -0.1 661,328 - +0.5 661,328 - -0.0 661,328 - -1.8 661,328 - +0.9 661,328 - -0.3 661,363 + -0.5 661,364 - +0.0 661,417 + -0.7 661,418 - -2.8 661,418 - +0.5 661,502 + -1.6 661,502 + -0.5 661,503 - -1.4 661,515 + -4.2 661,515 + -1.2 661,516 - -0.4 661,516 - -1.4 661,516 - -1.2 661,516 - -1.1 661,588 + -0.6 661,596 + +0.2 661,596 + -0.3 661,596 + -0.5 661,596 + +2.2 661,596 + -1.6 661,596 + +0.1 661,597 - +0.5 661,597 - -1.3 661,597 - +0.6 661,597 - -0.0 661,597 - -0.0 661,597 - +1.4 661,597 - -0.7 661,597 - -0.2 661,704 + +0.8 661,704 + -0.4 661,705 - -0.5 661,731 + ABZR87_RS03150 0.12 -0.2 661,732 - ABZR87_RS03150 0.12 +0.7 661,732 - ABZR87_RS03150 0.12 +1.4 661,785 + ABZR87_RS03150 0.17 +0.8 661,785 + ABZR87_RS03150 0.17 -0.1 661,786 - ABZR87_RS03150 0.17 +1.7 661,788 + ABZR87_RS03150 0.17 +0.5 661,788 + ABZR87_RS03150 0.17 +0.9 661,788 + ABZR87_RS03150 0.17 -1.3 661,789 - ABZR87_RS03150 0.17 +0.7 661,789 - ABZR87_RS03150 0.17 +0.2 661,920 + ABZR87_RS03150 0.30 -0.3 661,920 + ABZR87_RS03150 0.30 +1.8 661,968 + ABZR87_RS03150 0.34 -1.0 661,968 + ABZR87_RS03150 0.34 -0.8 661,968 + ABZR87_RS03150 0.34 -0.3 661,968 + ABZR87_RS03150 0.34 -0.6 661,968 + ABZR87_RS03150 0.34 +1.0 661,968 + ABZR87_RS03150 0.34 -0.5 661,968 + ABZR87_RS03150 0.34 -0.7 661,968 + ABZR87_RS03150 0.34 -1.8 661,969 - ABZR87_RS03150 0.34 +0.0 661,969 - ABZR87_RS03150 0.34 +0.6 661,969 - ABZR87_RS03150 0.34 -0.3 661,969 - ABZR87_RS03150 0.34 +0.7 661,969 - ABZR87_RS03150 0.34 +1.0 661,969 - ABZR87_RS03150 0.34 +0.5 661,969 - ABZR87_RS03150 0.34 +0.7 661,969 - ABZR87_RS03150 0.34 +0.3 662,130 + ABZR87_RS03150 0.50 -0.7 662,130 + ABZR87_RS03150 0.50 +0.0 662,130 + ABZR87_RS03150 0.50 -0.4 662,130 + ABZR87_RS03150 0.50 -0.6 662,130 + ABZR87_RS03150 0.50 +1.4 662,130 + ABZR87_RS03150 0.50 -0.4 662,130 + ABZR87_RS03150 0.50 -0.7 662,131 - ABZR87_RS03150 0.50 +1.0 662,131 - ABZR87_RS03150 0.50 +0.0 662,131 - ABZR87_RS03150 0.50 +1.3 662,131 - ABZR87_RS03150 0.50 -0.8 662,211 + ABZR87_RS03150 0.58 -1.2 662,211 + ABZR87_RS03150 0.58 -0.1 662,211 + ABZR87_RS03150 0.58 -0.6 662,211 + ABZR87_RS03150 0.58 -0.6 662,211 + ABZR87_RS03150 0.58 +0.2 662,211 + ABZR87_RS03150 0.58 -0.1 662,211 + ABZR87_RS03150 0.58 +0.6 662,212 - ABZR87_RS03150 0.58 -0.1 662,212 - ABZR87_RS03150 0.58 -1.6 662,212 - ABZR87_RS03150 0.58 -1.1 662,232 + ABZR87_RS03150 0.60 +0.5 662,232 + ABZR87_RS03150 0.60 -0.5 662,233 - ABZR87_RS03150 0.60 -2.6 662,233 - ABZR87_RS03150 0.60 -1.1 662,358 + ABZR87_RS03150 0.72 +0.4 662,358 + ABZR87_RS03150 0.72 +0.9 662,359 - ABZR87_RS03150 0.72 -0.7 662,359 - ABZR87_RS03150 0.72 -0.6 662,359 - ABZR87_RS03150 0.72 -2.2 662,359 - ABZR87_RS03150 0.72 -0.7 662,359 - ABZR87_RS03150 0.72 +0.3 662,367 + ABZR87_RS03150 0.72 -1.1 662,436 + ABZR87_RS03150 0.79 +0.3 662,436 + ABZR87_RS03150 0.79 -0.1 662,436 + ABZR87_RS03150 0.79 -0.1 662,436 + ABZR87_RS03150 0.79 +0.2 662,437 - ABZR87_RS03150 0.79 -0.2 662,437 - ABZR87_RS03150 0.79 +0.0 662,437 - ABZR87_RS03150 0.79 -0.2 662,437 - ABZR87_RS03150 0.79 +2.0 662,437 - ABZR87_RS03150 0.79 +0.5 662,437 - ABZR87_RS03150 0.79 -0.3 662,437 - ABZR87_RS03150 0.79 +0.6 662,493 + ABZR87_RS03150 0.85 +0.7 662,494 - ABZR87_RS03150 0.85 +0.7 662,494 - ABZR87_RS03150 0.85 -0.4 662,494 - ABZR87_RS03150 0.85 -0.3 662,503 - ABZR87_RS03150 0.85 +0.9 662,517 + ABZR87_RS03150 0.87 +0.8 662,517 + ABZR87_RS03150 0.87 -1.9 662,517 + ABZR87_RS03150 0.87 -0.2 662,517 + ABZR87_RS03150 0.87 -0.3 662,517 + ABZR87_RS03150 0.87 -0.9 662,518 - ABZR87_RS03150 0.87 -2.5 662,518 - ABZR87_RS03150 0.87 -1.3 662,518 - ABZR87_RS03150 0.87 +0.3 662,518 - ABZR87_RS03150 0.87 -1.7 662,518 - ABZR87_RS03150 0.87 -1.2 662,518 - ABZR87_RS03150 0.87 +2.3 662,544 + ABZR87_RS03150 0.89 +0.4 662,544 + ABZR87_RS03150 0.89 -1.1 662,544 + ABZR87_RS03150 0.89 +1.4 662,544 + ABZR87_RS03150 0.89 -0.8 662,559 + +0.1 662,559 + -1.2 662,559 + +0.1 662,560 - +1.2 662,652 + -0.8 662,652 + -1.0 662,653 - -0.7 662,720 + +1.0 662,721 - +1.4 662,721 - +0.3 662,721 - -0.0 662,721 - +1.9 662,721 - +0.7 662,743 - -0.5 662,743 - -0.4 662,809 - +6.0 662,809 - -2.4 662,859 - -0.1 662,859 - -0.5 662,908 + +0.4 662,971 - -0.5 663,087 + +0.0 663,087 + +0.4 663,087 + +0.4 663,088 - -0.8 663,180 - ABZR87_RS03155 0.11 -0.0 663,224 + ABZR87_RS03155 0.13 +0.8 663,225 - ABZR87_RS03155 0.13 +0.8 663,335 + ABZR87_RS03155 0.18 +0.4 663,336 - ABZR87_RS03155 0.18 +0.0 663,336 - ABZR87_RS03155 0.18 +0.0
Or see this region's nucleotide sequence