Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03125 and ABZR87_RS03130 overlap by 4 nucleotides ABZR87_RS03130 and ABZR87_RS03135 are separated by 9 nucleotides ABZR87_RS03135 and ABZR87_RS03140 are separated by 210 nucleotides
ABZR87_RS03125: ABZR87_RS03125 - hypothetical protein, at 657,807 to 658,430
_RS03125
ABZR87_RS03130: ABZR87_RS03130 - hypothetical protein, at 658,427 to 659,047
_RS03130
ABZR87_RS03135: ABZR87_RS03135 - hypothetical protein, at 659,057 to 659,398
_RS03135
ABZR87_RS03140: ABZR87_RS03140 - PepSY-associated TM helix domain-containing protein, at 659,609 to 660,385
_RS03140
Position (kb) 659
660 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 658.094 kb on + strand, within ABZR87_RS03125 at 658.094 kb on + strand, within ABZR87_RS03125 at 658.094 kb on + strand, within ABZR87_RS03125 at 658.094 kb on + strand, within ABZR87_RS03125 at 658.094 kb on + strand, within ABZR87_RS03125 at 658.094 kb on + strand, within ABZR87_RS03125 at 658.094 kb on + strand, within ABZR87_RS03125 at 658.095 kb on - strand, within ABZR87_RS03125 at 658.095 kb on - strand, within ABZR87_RS03125 at 658.095 kb on - strand, within ABZR87_RS03125 at 658.098 kb on + strand, within ABZR87_RS03125 at 658.099 kb on - strand, within ABZR87_RS03125 at 658.102 kb on + strand, within ABZR87_RS03125 at 658.103 kb on - strand, within ABZR87_RS03125 at 658.103 kb on - strand, within ABZR87_RS03125 at 658.124 kb on + strand, within ABZR87_RS03125 at 658.134 kb on - strand, within ABZR87_RS03125 at 658.134 kb on - strand, within ABZR87_RS03125 at 658.135 kb on + strand, within ABZR87_RS03125 at 658.162 kb on + strand, within ABZR87_RS03125 at 658.187 kb on + strand, within ABZR87_RS03125 at 658.187 kb on + strand, within ABZR87_RS03125 at 658.187 kb on + strand, within ABZR87_RS03125 at 658.207 kb on + strand, within ABZR87_RS03125 at 658.208 kb on - strand, within ABZR87_RS03125 at 658.228 kb on + strand, within ABZR87_RS03125 at 658.228 kb on + strand, within ABZR87_RS03125 at 658.228 kb on + strand, within ABZR87_RS03125 at 658.229 kb on - strand, within ABZR87_RS03125 at 658.229 kb on - strand, within ABZR87_RS03125 at 658.294 kb on - strand, within ABZR87_RS03125 at 658.365 kb on + strand, within ABZR87_RS03125 at 658.534 kb on + strand, within ABZR87_RS03130 at 658.534 kb on + strand, within ABZR87_RS03130 at 658.534 kb on + strand, within ABZR87_RS03130 at 658.534 kb on + strand, within ABZR87_RS03130 at 658.534 kb on + strand, within ABZR87_RS03130 at 658.535 kb on - strand, within ABZR87_RS03130 at 658.535 kb on - strand, within ABZR87_RS03130 at 658.535 kb on - strand, within ABZR87_RS03130 at 658.535 kb on - strand, within ABZR87_RS03130 at 658.558 kb on + strand, within ABZR87_RS03130 at 658.559 kb on - strand, within ABZR87_RS03130 at 658.579 kb on + strand, within ABZR87_RS03130 at 658.579 kb on + strand, within ABZR87_RS03130 at 658.579 kb on + strand, within ABZR87_RS03130 at 658.579 kb on + strand, within ABZR87_RS03130 at 658.579 kb on + strand, within ABZR87_RS03130 at 658.580 kb on - strand, within ABZR87_RS03130 at 658.580 kb on - strand, within ABZR87_RS03130 at 658.580 kb on - strand, within ABZR87_RS03130 at 658.580 kb on - strand, within ABZR87_RS03130 at 658.580 kb on - strand, within ABZR87_RS03130 at 658.581 kb on + strand, within ABZR87_RS03130 at 658.581 kb on + strand, within ABZR87_RS03130 at 658.581 kb on + strand, within ABZR87_RS03130 at 658.582 kb on - strand, within ABZR87_RS03130 at 658.582 kb on - strand, within ABZR87_RS03130 at 658.582 kb on - strand, within ABZR87_RS03130 at 658.582 kb on - strand, within ABZR87_RS03130 at 658.603 kb on + strand, within ABZR87_RS03130 at 658.603 kb on + strand, within ABZR87_RS03130 at 658.603 kb on + strand, within ABZR87_RS03130 at 658.604 kb on - strand, within ABZR87_RS03130 at 658.606 kb on + strand, within ABZR87_RS03130 at 658.676 kb on + strand, within ABZR87_RS03130 at 658.676 kb on + strand, within ABZR87_RS03130 at 658.691 kb on + strand, within ABZR87_RS03130 at 658.759 kb on + strand, within ABZR87_RS03130 at 658.760 kb on - strand, within ABZR87_RS03130 at 658.760 kb on - strand, within ABZR87_RS03130 at 658.778 kb on - strand, within ABZR87_RS03130 at 658.781 kb on + strand, within ABZR87_RS03130 at 658.782 kb on - strand, within ABZR87_RS03130 at 658.782 kb on - strand, within ABZR87_RS03130 at 658.782 kb on - strand, within ABZR87_RS03130 at 658.782 kb on - strand, within ABZR87_RS03130 at 658.908 kb on + strand, within ABZR87_RS03130 at 658.908 kb on + strand, within ABZR87_RS03130 at 658.909 kb on - strand, within ABZR87_RS03130 at 658.909 kb on - strand, within ABZR87_RS03130 at 659.009 kb on - strand at 659.009 kb on - strand at 659.009 kb on - strand at 659.082 kb on + strand at 659.082 kb on + strand at 659.082 kb on + strand at 659.082 kb on + strand at 659.082 kb on + strand at 659.082 kb on + strand at 659.082 kb on + strand at 659.082 kb on + strand at 659.083 kb on - strand at 659.083 kb on - strand at 659.083 kb on - strand at 659.083 kb on - strand at 659.083 kb on - strand at 659.139 kb on + strand, within ABZR87_RS03135 at 659.140 kb on - strand, within ABZR87_RS03135 at 659.140 kb on - strand, within ABZR87_RS03135 at 659.140 kb on - strand, within ABZR87_RS03135 at 659.187 kb on + strand, within ABZR87_RS03135 at 659.188 kb on - strand, within ABZR87_RS03135 at 659.188 kb on - strand, within ABZR87_RS03135 at 659.301 kb on + strand, within ABZR87_RS03135 at 659.301 kb on + strand, within ABZR87_RS03135 at 659.301 kb on + strand, within ABZR87_RS03135 at 659.301 kb on + strand, within ABZR87_RS03135 at 659.302 kb on - strand, within ABZR87_RS03135 at 659.302 kb on - strand, within ABZR87_RS03135 at 659.302 kb on - strand, within ABZR87_RS03135 at 659.325 kb on + strand, within ABZR87_RS03135 at 659.325 kb on + strand, within ABZR87_RS03135 at 659.325 kb on + strand, within ABZR87_RS03135 at 659.325 kb on + strand, within ABZR87_RS03135 at 659.326 kb on - strand, within ABZR87_RS03135 at 659.326 kb on - strand, within ABZR87_RS03135 at 659.326 kb on - strand, within ABZR87_RS03135 at 659.326 kb on - strand, within ABZR87_RS03135 at 659.326 kb on - strand, within ABZR87_RS03135 at 659.375 kb on + strand at 659.375 kb on + strand at 659.375 kb on + strand at 659.375 kb on + strand at 659.376 kb on - strand at 659.376 kb on - strand at 659.376 kb on - strand at 659.376 kb on - strand at 659.424 kb on + strand at 659.424 kb on + strand at 659.424 kb on + strand at 659.424 kb on + strand at 659.425 kb on - strand at 659.425 kb on - strand at 659.438 kb on + strand at 659.438 kb on + strand at 659.438 kb on + strand at 659.439 kb on - strand at 659.458 kb on + strand at 659.458 kb on + strand at 659.458 kb on + strand at 659.458 kb on + strand at 659.458 kb on + strand at 659.459 kb on - strand at 659.507 kb on + strand at 659.507 kb on + strand at 659.507 kb on + strand at 659.507 kb on + strand at 659.507 kb on + strand at 659.507 kb on + strand at 659.508 kb on - strand at 659.508 kb on - strand at 659.508 kb on - strand at 659.508 kb on - strand at 659.508 kb on - strand at 659.508 kb on - strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.510 kb on + strand at 659.511 kb on - strand at 659.511 kb on - strand at 659.511 kb on - strand at 659.511 kb on - strand at 659.511 kb on - strand at 659.511 kb on - strand at 659.511 kb on - strand at 659.511 kb on - strand at 659.511 kb on - strand at 659.517 kb on + strand at 659.518 kb on - strand at 659.553 kb on + strand at 659.554 kb on - strand at 659.554 kb on - strand at 659.555 kb on + strand at 659.857 kb on + strand, within ABZR87_RS03140 at 659.857 kb on + strand, within ABZR87_RS03140 at 659.858 kb on - strand, within ABZR87_RS03140 at 659.858 kb on - strand, within ABZR87_RS03140 at 660.128 kb on + strand, within ABZR87_RS03140 at 660.129 kb on - strand, within ABZR87_RS03140 at 660.244 kb on + strand, within ABZR87_RS03140 at 660.245 kb on - strand, within ABZR87_RS03140 at 660.245 kb on - strand, within ABZR87_RS03140 at 660.245 kb on - strand, within ABZR87_RS03140 at 660.245 kb on - strand, within ABZR87_RS03140
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 658,094 + ABZR87_RS03125 0.46 -0.9 658,094 + ABZR87_RS03125 0.46 +0.3 658,094 + ABZR87_RS03125 0.46 +0.9 658,094 + ABZR87_RS03125 0.46 +0.3 658,094 + ABZR87_RS03125 0.46 +1.3 658,094 + ABZR87_RS03125 0.46 +0.4 658,094 + ABZR87_RS03125 0.46 +0.1 658,095 - ABZR87_RS03125 0.46 +0.8 658,095 - ABZR87_RS03125 0.46 +0.4 658,095 - ABZR87_RS03125 0.46 -1.5 658,098 + ABZR87_RS03125 0.47 -2.1 658,099 - ABZR87_RS03125 0.47 +0.5 658,102 + ABZR87_RS03125 0.47 -0.4 658,103 - ABZR87_RS03125 0.47 -0.6 658,103 - ABZR87_RS03125 0.47 +0.1 658,124 + ABZR87_RS03125 0.51 +0.1 658,134 - ABZR87_RS03125 0.52 +1.1 658,134 - ABZR87_RS03125 0.52 +1.0 658,135 + ABZR87_RS03125 0.53 -0.2 658,162 + ABZR87_RS03125 0.57 +0.3 658,187 + ABZR87_RS03125 0.61 +0.3 658,187 + ABZR87_RS03125 0.61 +0.1 658,187 + ABZR87_RS03125 0.61 +1.4 658,207 + ABZR87_RS03125 0.64 +1.6 658,208 - ABZR87_RS03125 0.64 +0.1 658,228 + ABZR87_RS03125 0.67 +0.1 658,228 + ABZR87_RS03125 0.67 +0.8 658,228 + ABZR87_RS03125 0.67 -0.7 658,229 - ABZR87_RS03125 0.68 -1.6 658,229 - ABZR87_RS03125 0.68 -0.3 658,294 - ABZR87_RS03125 0.78 -1.6 658,365 + ABZR87_RS03125 0.89 -0.1 658,534 + ABZR87_RS03130 0.17 +1.7 658,534 + ABZR87_RS03130 0.17 -0.7 658,534 + ABZR87_RS03130 0.17 +0.7 658,534 + ABZR87_RS03130 0.17 -0.6 658,534 + ABZR87_RS03130 0.17 +0.7 658,535 - ABZR87_RS03130 0.17 -0.9 658,535 - ABZR87_RS03130 0.17 -1.3 658,535 - ABZR87_RS03130 0.17 +0.8 658,535 - ABZR87_RS03130 0.17 +0.1 658,558 + ABZR87_RS03130 0.21 -1.8 658,559 - ABZR87_RS03130 0.21 +0.6 658,579 + ABZR87_RS03130 0.24 +0.5 658,579 + ABZR87_RS03130 0.24 -1.6 658,579 + ABZR87_RS03130 0.24 -0.4 658,579 + ABZR87_RS03130 0.24 -0.6 658,579 + ABZR87_RS03130 0.24 +1.7 658,580 - ABZR87_RS03130 0.25 +1.3 658,580 - ABZR87_RS03130 0.25 +0.0 658,580 - ABZR87_RS03130 0.25 -0.7 658,580 - ABZR87_RS03130 0.25 +0.4 658,580 - ABZR87_RS03130 0.25 +0.2 658,581 + ABZR87_RS03130 0.25 +0.0 658,581 + ABZR87_RS03130 0.25 -0.7 658,581 + ABZR87_RS03130 0.25 +0.6 658,582 - ABZR87_RS03130 0.25 -1.2 658,582 - ABZR87_RS03130 0.25 -2.4 658,582 - ABZR87_RS03130 0.25 +4.4 658,582 - ABZR87_RS03130 0.25 -2.1 658,603 + ABZR87_RS03130 0.28 +0.2 658,603 + ABZR87_RS03130 0.28 +1.1 658,603 + ABZR87_RS03130 0.28 -1.4 658,604 - ABZR87_RS03130 0.29 -0.4 658,606 + ABZR87_RS03130 0.29 +0.4 658,676 + ABZR87_RS03130 0.40 +1.0 658,676 + ABZR87_RS03130 0.40 +0.4 658,691 + ABZR87_RS03130 0.43 -0.9 658,759 + ABZR87_RS03130 0.53 +0.7 658,760 - ABZR87_RS03130 0.54 -0.2 658,760 - ABZR87_RS03130 0.54 +1.0 658,778 - ABZR87_RS03130 0.57 -0.6 658,781 + ABZR87_RS03130 0.57 -0.1 658,782 - ABZR87_RS03130 0.57 +0.4 658,782 - ABZR87_RS03130 0.57 -0.1 658,782 - ABZR87_RS03130 0.57 +0.3 658,782 - ABZR87_RS03130 0.57 +1.0 658,908 + ABZR87_RS03130 0.77 +1.3 658,908 + ABZR87_RS03130 0.77 -0.0 658,909 - ABZR87_RS03130 0.78 +0.0 658,909 - ABZR87_RS03130 0.78 -1.9 659,009 - -0.4 659,009 - -0.2 659,009 - -0.7 659,082 + +0.5 659,082 + -0.1 659,082 + -0.3 659,082 + +0.1 659,082 + -1.0 659,082 + +0.3 659,082 + +1.8 659,082 + -0.7 659,083 - -1.0 659,083 - +0.2 659,083 - +0.9 659,083 - -0.4 659,083 - -1.2 659,139 + ABZR87_RS03135 0.24 +0.7 659,140 - ABZR87_RS03135 0.24 +0.8 659,140 - ABZR87_RS03135 0.24 +1.4 659,140 - ABZR87_RS03135 0.24 +0.7 659,187 + ABZR87_RS03135 0.38 +0.2 659,188 - ABZR87_RS03135 0.38 -0.5 659,188 - ABZR87_RS03135 0.38 -2.3 659,301 + ABZR87_RS03135 0.71 -1.3 659,301 + ABZR87_RS03135 0.71 -0.5 659,301 + ABZR87_RS03135 0.71 +0.0 659,301 + ABZR87_RS03135 0.71 -0.9 659,302 - ABZR87_RS03135 0.72 +0.9 659,302 - ABZR87_RS03135 0.72 -0.8 659,302 - ABZR87_RS03135 0.72 +1.4 659,325 + ABZR87_RS03135 0.78 -0.6 659,325 + ABZR87_RS03135 0.78 -1.0 659,325 + ABZR87_RS03135 0.78 -0.9 659,325 + ABZR87_RS03135 0.78 +0.9 659,326 - ABZR87_RS03135 0.79 -0.1 659,326 - ABZR87_RS03135 0.79 -1.3 659,326 - ABZR87_RS03135 0.79 +0.0 659,326 - ABZR87_RS03135 0.79 +0.3 659,326 - ABZR87_RS03135 0.79 -1.1 659,375 + +0.3 659,375 + -0.3 659,375 + -0.7 659,375 + +0.6 659,376 - -1.4 659,376 - -1.1 659,376 - +0.1 659,376 - +0.7 659,424 + -1.0 659,424 + +2.3 659,424 + -1.7 659,424 + +1.0 659,425 - -2.9 659,425 - -1.7 659,438 + +0.7 659,438 + -0.2 659,438 + +0.9 659,439 - +0.4 659,458 + -1.6 659,458 + -1.3 659,458 + +0.8 659,458 + +1.4 659,458 + -0.8 659,459 - +1.1 659,507 + +0.7 659,507 + +0.8 659,507 + +0.2 659,507 + +0.2 659,507 + -0.6 659,507 + -0.8 659,508 - -0.2 659,508 - +0.5 659,508 - -1.0 659,508 - -3.3 659,508 - -0.7 659,508 - -0.1 659,510 + -0.5 659,510 + -0.3 659,510 + -2.4 659,510 + -1.8 659,510 + +0.8 659,510 + -0.4 659,510 + -1.1 659,510 + -0.4 659,510 + -0.2 659,510 + -2.3 659,510 + +1.7 659,510 + +0.0 659,510 + -0.2 659,511 - +1.2 659,511 - +1.2 659,511 - -1.3 659,511 - -0.8 659,511 - -0.6 659,511 - +0.8 659,511 - +0.1 659,511 - +0.4 659,511 - -1.1 659,517 + +0.8 659,518 - -0.9 659,553 + +1.4 659,554 - -0.9 659,554 - -0.3 659,555 + -0.2 659,857 + ABZR87_RS03140 0.32 -2.6 659,857 + ABZR87_RS03140 0.32 +5.1 659,858 - ABZR87_RS03140 0.32 +0.1 659,858 - ABZR87_RS03140 0.32 -0.1 660,128 + ABZR87_RS03140 0.67 +0.1 660,129 - ABZR87_RS03140 0.67 -0.3 660,244 + ABZR87_RS03140 0.82 +1.4 660,245 - ABZR87_RS03140 0.82 -0.4 660,245 - ABZR87_RS03140 0.82 -1.1 660,245 - ABZR87_RS03140 0.82 +0.2 660,245 - ABZR87_RS03140 0.82 +0.2
Or see this region's nucleotide sequence