Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01050

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01040 and ABZR87_RS01045 overlap by 4 nucleotidesABZR87_RS01045 and ABZR87_RS01050 overlap by 4 nucleotidesABZR87_RS01050 and ABZR87_RS01055 are separated by 125 nucleotides ABZR87_RS01040: ABZR87_RS01040 - ABC transporter permease subunit, at 207,993 to 208,862 _RS01040 ABZR87_RS01045: ABZR87_RS01045 - ATP-binding cassette domain-containing protein, at 208,859 to 209,650 _RS01045 ABZR87_RS01050: ABZR87_RS01050 - taurine ABC transporter substrate-binding protein, at 209,647 to 210,711 _RS01050 ABZR87_RS01055: ABZR87_RS01055 - heat-inducible transcriptional repressor HrcA, at 210,837 to 211,895 _RS01055 Position (kb) 209 210 211Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 208.726 kb on - strand, within ABZR87_RS01040at 208.901 kb on + strandat 208.902 kb on - strandat 209.234 kb on - strand, within ABZR87_RS01045at 209.250 kb on + strand, within ABZR87_RS01045at 209.250 kb on + strand, within ABZR87_RS01045at 209.251 kb on - strand, within ABZR87_RS01045at 209.251 kb on - strand, within ABZR87_RS01045at 209.251 kb on - strand, within ABZR87_RS01045at 209.613 kb on + strandat 209.613 kb on + strandat 209.613 kb on + strandat 209.614 kb on - strandat 209.726 kb on + strandat 209.727 kb on - strandat 209.864 kb on + strand, within ABZR87_RS01050at 209.864 kb on + strand, within ABZR87_RS01050at 209.864 kb on + strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.865 kb on - strand, within ABZR87_RS01050at 209.969 kb on + strand, within ABZR87_RS01050at 209.969 kb on + strand, within ABZR87_RS01050at 209.969 kb on + strand, within ABZR87_RS01050at 210.153 kb on + strand, within ABZR87_RS01050at 210.153 kb on + strand, within ABZR87_RS01050at 210.154 kb on - strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.290 kb on + strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.291 kb on - strand, within ABZR87_RS01050at 210.296 kb on - strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.528 kb on + strand, within ABZR87_RS01050at 210.529 kb on - strand, within ABZR87_RS01050at 210.529 kb on - strand, within ABZR87_RS01050at 210.529 kb on - strand, within ABZR87_RS01050at 210.530 kb on + strand, within ABZR87_RS01050at 210.530 kb on + strand, within ABZR87_RS01050at 210.596 kb on + strand, within ABZR87_RS01050at 210.806 kb on + strandat 210.806 kb on + strandat 210.806 kb on + strandat 210.806 kb on + strandat 210.807 kb on - strandat 210.807 kb on - strandat 210.807 kb on - strandat 210.807 kb on - strandat 210.841 kb on + strandat 210.841 kb on + strandat 210.841 kb on + strandat 210.841 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.842 kb on - strandat 210.878 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.904 kb on + strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.905 kb on - strandat 210.964 kb on + strand, within ABZR87_RS01055at 210.965 kb on - strand, within ABZR87_RS01055at 210.965 kb on - strand, within ABZR87_RS01055at 210.965 kb on - strand, within ABZR87_RS01055at 210.965 kb on - strand, within ABZR87_RS01055at 211.053 kb on + strand, within ABZR87_RS01055at 211.054 kb on - strand, within ABZR87_RS01055at 211.115 kb on + strand, within ABZR87_RS01055at 211.116 kb on - strand, within ABZR87_RS01055at 211.118 kb on - strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.321 kb on + strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.322 kb on - strand, within ABZR87_RS01055at 211.325 kb on + strand, within ABZR87_RS01055at 211.325 kb on + strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.355 kb on - strand, within ABZR87_RS01055at 211.670 kb on + strand, within ABZR87_RS01055

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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208,726 - ABZR87_RS01040 0.84 +0.1
208,901 + -0.4
208,902 - -0.6
209,234 - ABZR87_RS01045 0.47 +1.0
209,250 + ABZR87_RS01045 0.49 -1.4
209,250 + ABZR87_RS01045 0.49 -1.7
209,251 - ABZR87_RS01045 0.49 +0.7
209,251 - ABZR87_RS01045 0.49 -0.6
209,251 - ABZR87_RS01045 0.49 -1.7
209,613 + +0.4
209,613 + +0.6
209,613 + +0.3
209,614 - -0.9
209,726 + -0.7
209,727 - +0.3
209,864 + ABZR87_RS01050 0.20 -1.1
209,864 + ABZR87_RS01050 0.20 -1.3
209,864 + ABZR87_RS01050 0.20 +1.1
209,865 - ABZR87_RS01050 0.20 +0.1
209,865 - ABZR87_RS01050 0.20 -0.6
209,865 - ABZR87_RS01050 0.20 -0.2
209,865 - ABZR87_RS01050 0.20 -0.0
209,865 - ABZR87_RS01050 0.20 -0.1
209,865 - ABZR87_RS01050 0.20 +0.6
209,865 - ABZR87_RS01050 0.20 +0.8
209,865 - ABZR87_RS01050 0.20 -1.1
209,969 + ABZR87_RS01050 0.30 +0.1
209,969 + ABZR87_RS01050 0.30 +1.3
209,969 + ABZR87_RS01050 0.30 -0.6
210,153 + ABZR87_RS01050 0.48 -0.1
210,153 + ABZR87_RS01050 0.48 -2.0
210,154 - ABZR87_RS01050 0.48 +0.3
210,290 + ABZR87_RS01050 0.60 +0.4
210,290 + ABZR87_RS01050 0.60 -0.5
210,290 + ABZR87_RS01050 0.60 -2.1
210,290 + ABZR87_RS01050 0.60 -1.3
210,290 + ABZR87_RS01050 0.60 +0.8
210,290 + ABZR87_RS01050 0.60 +0.9
210,290 + ABZR87_RS01050 0.60 -0.1
210,290 + ABZR87_RS01050 0.60 -0.3
210,290 + ABZR87_RS01050 0.60 +0.6
210,291 - ABZR87_RS01050 0.60 +0.3
210,291 - ABZR87_RS01050 0.60 -0.3
210,291 - ABZR87_RS01050 0.60 -0.4
210,291 - ABZR87_RS01050 0.60 -0.1
210,291 - ABZR87_RS01050 0.60 -0.9
210,291 - ABZR87_RS01050 0.60 +1.8
210,291 - ABZR87_RS01050 0.60 -0.8
210,291 - ABZR87_RS01050 0.60 +1.5
210,291 - ABZR87_RS01050 0.60 -0.5
210,291 - ABZR87_RS01050 0.60 +1.4
210,291 - ABZR87_RS01050 0.60 +0.7
210,291 - ABZR87_RS01050 0.60 -1.1
210,296 - ABZR87_RS01050 0.61 +0.4
210,528 + ABZR87_RS01050 0.83 -2.8
210,528 + ABZR87_RS01050 0.83 +0.3
210,528 + ABZR87_RS01050 0.83 +0.9
210,528 + ABZR87_RS01050 0.83 +0.3
210,529 - ABZR87_RS01050 0.83 -0.3
210,529 - ABZR87_RS01050 0.83 +0.6
210,529 - ABZR87_RS01050 0.83 +1.3
210,530 + ABZR87_RS01050 0.83 +0.4
210,530 + ABZR87_RS01050 0.83 -0.8
210,596 + ABZR87_RS01050 0.89 -1.6
210,806 + +0.4
210,806 + +2.0
210,806 + +0.3
210,806 + -1.0
210,807 - -1.7
210,807 - +0.7
210,807 - +0.8
210,807 - -0.8
210,841 + -0.8
210,841 + -0.5
210,841 + +0.2
210,841 - +0.5
210,842 - -0.5
210,842 - +0.7
210,842 - +1.1
210,842 - -1.1
210,842 - -1.4
210,842 - +0.2
210,878 + -1.3
210,904 + -2.2
210,904 + +0.3
210,904 + -0.4
210,904 + -0.8
210,904 + +0.4
210,904 + -0.6
210,905 - +0.9
210,905 - -1.0
210,905 - -2.1
210,905 - -1.2
210,905 - -1.1
210,905 - +0.5
210,905 - -0.5
210,905 - -0.4
210,964 + ABZR87_RS01055 0.12 -2.0
210,965 - ABZR87_RS01055 0.12 -1.6
210,965 - ABZR87_RS01055 0.12 -3.5
210,965 - ABZR87_RS01055 0.12 +2.3
210,965 - ABZR87_RS01055 0.12 -0.8
211,053 + ABZR87_RS01055 0.20 +0.0
211,054 - ABZR87_RS01055 0.20 -1.2
211,115 + ABZR87_RS01055 0.26 -1.1
211,116 - ABZR87_RS01055 0.26 -2.4
211,118 - ABZR87_RS01055 0.27 -0.7
211,321 + ABZR87_RS01055 0.46 -2.3
211,321 + ABZR87_RS01055 0.46 -0.2
211,321 + ABZR87_RS01055 0.46 -1.2
211,321 + ABZR87_RS01055 0.46 -1.2
211,322 - ABZR87_RS01055 0.46 +0.4
211,322 - ABZR87_RS01055 0.46 -1.5
211,322 - ABZR87_RS01055 0.46 -0.1
211,322 - ABZR87_RS01055 0.46 +0.3
211,322 - ABZR87_RS01055 0.46 -0.3
211,322 - ABZR87_RS01055 0.46 -0.8
211,322 - ABZR87_RS01055 0.46 -0.5
211,322 - ABZR87_RS01055 0.46 -0.2
211,322 - ABZR87_RS01055 0.46 -2.0
211,322 - ABZR87_RS01055 0.46 -2.9
211,322 - ABZR87_RS01055 0.46 -1.4
211,322 - ABZR87_RS01055 0.46 -0.7
211,325 + ABZR87_RS01055 0.46 -1.7
211,325 + ABZR87_RS01055 0.46 -2.0
211,355 - ABZR87_RS01055 0.49 -2.2
211,355 - ABZR87_RS01055 0.49 -0.5
211,355 - ABZR87_RS01055 0.49 -0.8
211,670 + ABZR87_RS01055 0.79 -0.3

Or see this region's nucleotide sequence