Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00860 and ABZR87_RS00865 are separated by 3 nucleotides ABZR87_RS00865 and ABZR87_RS00870 are separated by 125 nucleotides ABZR87_RS00870 and ABZR87_RS00875 are separated by 6 nucleotides ABZR87_RS00875 and ABZR87_RS00880 overlap by 4 nucleotides
ABZR87_RS00860: ABZR87_RS00860 - SirB1 family protein, at 172,881 to 173,726
_RS00860
ABZR87_RS00865: ABZR87_RS00865 - VTT domain-containing protein, at 173,730 to 174,374
_RS00865
ABZR87_RS00870: ABZR87_RS00870 - DNA mismatch repair endonuclease MutL, at 174,500 to 176,407
_RS00870
ABZR87_RS00875: ABZR87_RS00875 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 176,414 to 177,391
_RS00875
ABZR87_RS00880: ABZR87_RS00880 - GNAT family N-acetyltransferase, at 177,388 to 177,915
_RS00880
Position (kb) 174
175
176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.589 kb on + strand, within ABZR87_RS00860 at 173.637 kb on + strand, within ABZR87_RS00860 at 173.638 kb on - strand, within ABZR87_RS00860 at 173.638 kb on - strand, within ABZR87_RS00860 at 173.638 kb on - strand, within ABZR87_RS00860 at 173.732 kb on - strand at 173.732 kb on - strand at 173.858 kb on + strand, within ABZR87_RS00865 at 174.429 kb on + strand at 174.429 kb on + strand at 174.430 kb on - strand at 174.430 kb on - strand at 174.488 kb on + strand at 174.488 kb on + strand at 174.488 kb on + strand at 174.488 kb on + strand at 174.488 kb on + strand at 174.488 kb on + strand at 174.489 kb on - strand at 174.489 kb on - strand at 174.489 kb on - strand at 174.489 kb on - strand at 174.489 kb on - strand at 174.489 kb on - strand at 174.962 kb on + strand, within ABZR87_RS00870 at 174.962 kb on + strand, within ABZR87_RS00870 at 174.962 kb on + strand, within ABZR87_RS00870 at 174.962 kb on + strand, within ABZR87_RS00870 at 174.963 kb on - strand, within ABZR87_RS00870 at 174.963 kb on - strand, within ABZR87_RS00870 at 174.963 kb on - strand, within ABZR87_RS00870 at 174.963 kb on - strand, within ABZR87_RS00870 at 175.265 kb on + strand, within ABZR87_RS00870 at 175.265 kb on + strand, within ABZR87_RS00870 at 175.265 kb on + strand, within ABZR87_RS00870 at 175.265 kb on + strand, within ABZR87_RS00870 at 175.266 kb on - strand, within ABZR87_RS00870 at 175.266 kb on - strand, within ABZR87_RS00870 at 175.266 kb on - strand, within ABZR87_RS00870 at 175.323 kb on - strand, within ABZR87_RS00870 at 175.358 kb on + strand, within ABZR87_RS00870 at 175.358 kb on + strand, within ABZR87_RS00870 at 175.358 kb on + strand, within ABZR87_RS00870 at 175.359 kb on - strand, within ABZR87_RS00870 at 175.359 kb on - strand, within ABZR87_RS00870 at 175.463 kb on + strand, within ABZR87_RS00870 at 175.463 kb on + strand, within ABZR87_RS00870 at 175.655 kb on + strand, within ABZR87_RS00870 at 175.656 kb on - strand, within ABZR87_RS00870 at 175.656 kb on - strand, within ABZR87_RS00870 at 175.865 kb on + strand, within ABZR87_RS00870 at 175.865 kb on + strand, within ABZR87_RS00870 at 175.865 kb on + strand, within ABZR87_RS00870 at 175.865 kb on + strand, within ABZR87_RS00870 at 175.865 kb on + strand, within ABZR87_RS00870 at 175.865 kb on + strand, within ABZR87_RS00870 at 175.865 kb on + strand, within ABZR87_RS00870 at 175.865 kb on + strand, within ABZR87_RS00870 at 175.866 kb on - strand, within ABZR87_RS00870 at 175.866 kb on - strand, within ABZR87_RS00870 at 175.866 kb on - strand, within ABZR87_RS00870 at 175.866 kb on - strand, within ABZR87_RS00870 at 175.934 kb on + strand, within ABZR87_RS00870 at 175.934 kb on + strand, within ABZR87_RS00870 at 175.934 kb on + strand, within ABZR87_RS00870 at 175.934 kb on + strand, within ABZR87_RS00870 at 176.549 kb on + strand, within ABZR87_RS00875 at 176.646 kb on - strand, within ABZR87_RS00875 at 176.646 kb on - strand, within ABZR87_RS00875 at 176.646 kb on - strand, within ABZR87_RS00875 at 176.646 kb on - strand, within ABZR87_RS00875 at 176.741 kb on + strand, within ABZR87_RS00875 at 176.741 kb on + strand, within ABZR87_RS00875 at 176.742 kb on - strand, within ABZR87_RS00875 at 176.742 kb on - strand, within ABZR87_RS00875 at 176.742 kb on - strand, within ABZR87_RS00875 at 176.744 kb on + strand, within ABZR87_RS00875 at 176.744 kb on + strand, within ABZR87_RS00875 at 176.744 kb on + strand, within ABZR87_RS00875 at 176.890 kb on - strand, within ABZR87_RS00875 at 176.912 kb on - strand, within ABZR87_RS00875 at 176.912 kb on - strand, within ABZR87_RS00875 at 176.933 kb on + strand, within ABZR87_RS00875 at 177.021 kb on - strand, within ABZR87_RS00875 at 177.201 kb on - strand, within ABZR87_RS00875 at 177.335 kb on + strand at 177.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 173,589 + ABZR87_RS00860 0.84 +0.2 173,637 + ABZR87_RS00860 0.89 -1.6 173,638 - ABZR87_RS00860 0.89 -0.0 173,638 - ABZR87_RS00860 0.89 +0.9 173,638 - ABZR87_RS00860 0.89 -1.7 173,732 - -0.3 173,732 - -0.6 173,858 + ABZR87_RS00865 0.20 +1.3 174,429 + +0.0 174,429 + -0.3 174,430 - -0.3 174,430 - -2.8 174,488 + +0.2 174,488 + +3.7 174,488 + +0.3 174,488 + -0.5 174,488 + -0.7 174,488 + -2.2 174,489 - -0.3 174,489 - +0.2 174,489 - -0.1 174,489 - -1.4 174,489 - -0.0 174,489 - +0.7 174,962 + ABZR87_RS00870 0.24 +0.1 174,962 + ABZR87_RS00870 0.24 -1.6 174,962 + ABZR87_RS00870 0.24 -0.7 174,962 + ABZR87_RS00870 0.24 +1.7 174,963 - ABZR87_RS00870 0.24 -0.2 174,963 - ABZR87_RS00870 0.24 -1.1 174,963 - ABZR87_RS00870 0.24 -0.3 174,963 - ABZR87_RS00870 0.24 -1.3 175,265 + ABZR87_RS00870 0.40 -0.1 175,265 + ABZR87_RS00870 0.40 -0.5 175,265 + ABZR87_RS00870 0.40 -0.6 175,265 + ABZR87_RS00870 0.40 -0.8 175,266 - ABZR87_RS00870 0.40 +0.5 175,266 - ABZR87_RS00870 0.40 +0.4 175,266 - ABZR87_RS00870 0.40 -0.4 175,323 - ABZR87_RS00870 0.43 -0.0 175,358 + ABZR87_RS00870 0.45 +0.0 175,358 + ABZR87_RS00870 0.45 -1.9 175,358 + ABZR87_RS00870 0.45 +0.4 175,359 - ABZR87_RS00870 0.45 -2.1 175,359 - ABZR87_RS00870 0.45 -1.8 175,463 + ABZR87_RS00870 0.50 +0.4 175,463 + ABZR87_RS00870 0.50 +2.5 175,655 + ABZR87_RS00870 0.61 +0.1 175,656 - ABZR87_RS00870 0.61 +0.0 175,656 - ABZR87_RS00870 0.61 +1.0 175,865 + ABZR87_RS00870 0.72 +1.0 175,865 + ABZR87_RS00870 0.72 +1.3 175,865 + ABZR87_RS00870 0.72 +0.4 175,865 + ABZR87_RS00870 0.72 -0.3 175,865 + ABZR87_RS00870 0.72 -0.9 175,865 + ABZR87_RS00870 0.72 -1.9 175,865 + ABZR87_RS00870 0.72 +0.1 175,865 + ABZR87_RS00870 0.72 -0.8 175,866 - ABZR87_RS00870 0.72 -1.6 175,866 - ABZR87_RS00870 0.72 +1.9 175,866 - ABZR87_RS00870 0.72 +0.8 175,866 - ABZR87_RS00870 0.72 -0.9 175,934 + ABZR87_RS00870 0.75 -1.2 175,934 + ABZR87_RS00870 0.75 -1.1 175,934 + ABZR87_RS00870 0.75 +0.5 175,934 + ABZR87_RS00870 0.75 -0.1 176,549 + ABZR87_RS00875 0.14 -1.3 176,646 - ABZR87_RS00875 0.24 -1.1 176,646 - ABZR87_RS00875 0.24 -1.3 176,646 - ABZR87_RS00875 0.24 -0.9 176,646 - ABZR87_RS00875 0.24 -1.3 176,741 + ABZR87_RS00875 0.33 -0.5 176,741 + ABZR87_RS00875 0.33 -0.8 176,742 - ABZR87_RS00875 0.34 +3.0 176,742 - ABZR87_RS00875 0.34 -1.5 176,742 - ABZR87_RS00875 0.34 -1.4 176,744 + ABZR87_RS00875 0.34 -0.6 176,744 + ABZR87_RS00875 0.34 -2.2 176,744 + ABZR87_RS00875 0.34 -0.9 176,890 - ABZR87_RS00875 0.49 +0.5 176,912 - ABZR87_RS00875 0.51 -1.8 176,912 - ABZR87_RS00875 0.51 +0.8 176,933 + ABZR87_RS00875 0.53 +0.7 177,021 - ABZR87_RS00875 0.62 -1.0 177,201 - ABZR87_RS00875 0.80 -1.9 177,335 + +0.2 177,336 - -0.5
Or see this region's nucleotide sequence