Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00300

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00290 and ABZR87_RS00295 are separated by 66 nucleotidesABZR87_RS00295 and ABZR87_RS00300 are separated by 16 nucleotidesABZR87_RS00300 and ABZR87_RS00305 are separated by 13 nucleotides ABZR87_RS00290: ABZR87_RS00290 - GNAT family N-acetyltransferase, at 59,663 to 60,139 _RS00290 ABZR87_RS00295: ABZR87_RS00295 - ABC transporter ATP-binding protein, at 60,206 to 60,922 _RS00295 ABZR87_RS00300: ABZR87_RS00300 - ABC transporter ATP-binding protein, at 60,939 to 61,715 _RS00300 ABZR87_RS00305: ABZR87_RS00305 - ABC transporter ATP-binding protein, at 61,729 to 62,856 _RS00305 Position (kb) 60 61 62Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 60.017 kb on - strand, within ABZR87_RS00290at 60.017 kb on - strand, within ABZR87_RS00290at 60.050 kb on + strand, within ABZR87_RS00290at 60.050 kb on + strand, within ABZR87_RS00290at 60.051 kb on - strand, within ABZR87_RS00290at 60.119 kb on + strandat 60.119 kb on + strandat 60.119 kb on + strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.120 kb on - strandat 60.208 kb on - strandat 60.208 kb on - strandat 60.208 kb on - strandat 60.208 kb on - strandat 60.219 kb on + strandat 60.219 kb on + strandat 60.220 kb on - strandat 60.220 kb on - strandat 60.220 kb on - strandat 60.297 kb on + strand, within ABZR87_RS00295at 60.699 kb on + strand, within ABZR87_RS00295at 60.699 kb on + strand, within ABZR87_RS00295at 60.700 kb on - strand, within ABZR87_RS00295at 60.700 kb on - strand, within ABZR87_RS00295at 60.732 kb on + strand, within ABZR87_RS00295at 60.733 kb on - strand, within ABZR87_RS00295at 60.879 kb on + strandat 60.911 kb on + strandat 60.912 kb on - strandat 60.922 kb on + strandat 60.922 kb on + strandat 60.922 kb on + strandat 60.923 kb on - strandat 60.961 kb on + strandat 61.244 kb on - strand, within ABZR87_RS00300at 61.244 kb on - strand, within ABZR87_RS00300at 61.244 kb on - strand, within ABZR87_RS00300at 61.264 kb on + strand, within ABZR87_RS00300at 61.264 kb on + strand, within ABZR87_RS00300at 61.265 kb on - strand, within ABZR87_RS00300at 61.273 kb on + strand, within ABZR87_RS00300at 61.273 kb on + strand, within ABZR87_RS00300at 61.274 kb on - strand, within ABZR87_RS00300at 61.291 kb on + strand, within ABZR87_RS00300at 61.291 kb on + strand, within ABZR87_RS00300at 61.291 kb on + strand, within ABZR87_RS00300at 61.292 kb on - strand, within ABZR87_RS00300at 61.504 kb on + strand, within ABZR87_RS00300at 61.505 kb on - strand, within ABZR87_RS00300at 61.546 kb on + strand, within ABZR87_RS00300at 61.546 kb on + strand, within ABZR87_RS00300at 61.546 kb on + strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.610 kb on - strand, within ABZR87_RS00300at 61.734 kb on + strandat 61.735 kb on - strandat 61.812 kb on - strandat 61.974 kb on + strand, within ABZR87_RS00305at 61.975 kb on - strand, within ABZR87_RS00305at 61.984 kb on - strand, within ABZR87_RS00305at 62.012 kb on + strand, within ABZR87_RS00305at 62.013 kb on - strand, within ABZR87_RS00305at 62.261 kb on + strand, within ABZR87_RS00305at 62.262 kb on - strand, within ABZR87_RS00305at 62.262 kb on - strand, within ABZR87_RS00305at 62.262 kb on - strand, within ABZR87_RS00305at 62.262 kb on - strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.265 kb on - strand, within ABZR87_RS00305at 62.265 kb on - strand, within ABZR87_RS00305at 62.265 kb on - strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.273 kb on + strand, within ABZR87_RS00305at 62.273 kb on + strand, within ABZR87_RS00305at 62.273 kb on + strand, within ABZR87_RS00305at 62.274 kb on - strand, within ABZR87_RS00305at 62.274 kb on - strand, within ABZR87_RS00305at 62.453 kb on + strand, within ABZR87_RS00305at 62.453 kb on + strand, within ABZR87_RS00305at 62.454 kb on - strand, within ABZR87_RS00305at 62.454 kb on - strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.628 kb on - strand, within ABZR87_RS00305at 62.628 kb on - strand, within ABZR87_RS00305at 62.628 kb on - strand, within ABZR87_RS00305at 62.628 kb on - strand, within ABZR87_RS00305at 62.643 kb on - strand, within ABZR87_RS00305at 62.643 kb on - strand, within ABZR87_RS00305at 62.643 kb on - strand, within ABZR87_RS00305at 62.654 kb on + strand, within ABZR87_RS00305at 62.655 kb on - strand, within ABZR87_RS00305at 62.655 kb on - strand, within ABZR87_RS00305

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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60,017 - ABZR87_RS00290 0.74 -1.0
60,017 - ABZR87_RS00290 0.74 +0.7
60,050 + ABZR87_RS00290 0.81 +1.6
60,050 + ABZR87_RS00290 0.81 -1.5
60,051 - ABZR87_RS00290 0.81 +1.4
60,119 + -0.3
60,119 + -1.7
60,119 + +0.9
60,120 - +1.6
60,120 - +0.8
60,120 - -0.4
60,120 - +0.7
60,120 - -0.9
60,120 - +0.8
60,208 - -1.1
60,208 - -1.5
60,208 - -0.1
60,208 - +0.4
60,219 + +1.2
60,219 + +0.3
60,220 - -3.9
60,220 - +0.8
60,220 - +1.4
60,297 + ABZR87_RS00295 0.13 +1.2
60,699 + ABZR87_RS00295 0.69 -1.3
60,699 + ABZR87_RS00295 0.69 -0.2
60,700 - ABZR87_RS00295 0.69 +0.8
60,700 - ABZR87_RS00295 0.69 -1.3
60,732 + ABZR87_RS00295 0.73 -2.2
60,733 - ABZR87_RS00295 0.74 -0.2
60,879 + +0.4
60,911 + -0.0
60,912 - -0.6
60,922 + -0.8
60,922 + +2.8
60,922 + -0.6
60,923 - -0.4
60,961 + +2.1
61,244 - ABZR87_RS00300 0.39 +1.5
61,244 - ABZR87_RS00300 0.39 +1.1
61,244 - ABZR87_RS00300 0.39 +0.6
61,264 + ABZR87_RS00300 0.42 -2.2
61,264 + ABZR87_RS00300 0.42 -1.5
61,265 - ABZR87_RS00300 0.42 -0.1
61,273 + ABZR87_RS00300 0.43 -0.9
61,273 + ABZR87_RS00300 0.43 -1.1
61,274 - ABZR87_RS00300 0.43 -0.8
61,291 + ABZR87_RS00300 0.45 -0.3
61,291 + ABZR87_RS00300 0.45 +0.6
61,291 + ABZR87_RS00300 0.45 -3.2
61,292 - ABZR87_RS00300 0.45 -0.8
61,504 + ABZR87_RS00300 0.73 -1.5
61,505 - ABZR87_RS00300 0.73 +2.2
61,546 + ABZR87_RS00300 0.78 -0.4
61,546 + ABZR87_RS00300 0.78 -1.2
61,546 + ABZR87_RS00300 0.78 -1.0
61,547 - ABZR87_RS00300 0.78 -1.1
61,547 - ABZR87_RS00300 0.78 +0.2
61,547 - ABZR87_RS00300 0.78 -0.2
61,547 - ABZR87_RS00300 0.78 -0.0
61,547 - ABZR87_RS00300 0.78 +0.9
61,547 - ABZR87_RS00300 0.78 -0.3
61,547 - ABZR87_RS00300 0.78 -1.8
61,547 - ABZR87_RS00300 0.78 -0.6
61,610 - ABZR87_RS00300 0.86 -0.1
61,734 + +1.0
61,735 - -0.3
61,812 - -0.4
61,974 + ABZR87_RS00305 0.22 -2.4
61,975 - ABZR87_RS00305 0.22 +0.5
61,984 - ABZR87_RS00305 0.23 -1.6
62,012 + ABZR87_RS00305 0.25 -0.3
62,013 - ABZR87_RS00305 0.25 -0.6
62,261 + ABZR87_RS00305 0.47 -1.7
62,262 - ABZR87_RS00305 0.47 -0.2
62,262 - ABZR87_RS00305 0.47 +1.3
62,262 - ABZR87_RS00305 0.47 -1.8
62,262 - ABZR87_RS00305 0.47 -0.7
62,264 + ABZR87_RS00305 0.47 -1.8
62,264 + ABZR87_RS00305 0.47 -1.9
62,264 + ABZR87_RS00305 0.47 +0.5
62,264 + ABZR87_RS00305 0.47 +0.2
62,264 + ABZR87_RS00305 0.47 -0.7
62,264 + ABZR87_RS00305 0.47 -0.2
62,264 + ABZR87_RS00305 0.47 -0.2
62,265 - ABZR87_RS00305 0.48 -0.1
62,265 - ABZR87_RS00305 0.48 -0.2
62,265 - ABZR87_RS00305 0.48 -0.7
62,267 + ABZR87_RS00305 0.48 -1.0
62,267 + ABZR87_RS00305 0.48 -0.7
62,267 + ABZR87_RS00305 0.48 -0.0
62,267 + ABZR87_RS00305 0.48 -0.9
62,267 + ABZR87_RS00305 0.48 -1.3
62,267 + ABZR87_RS00305 0.48 -1.1
62,267 + ABZR87_RS00305 0.48 -2.0
62,267 + ABZR87_RS00305 0.48 -0.0
62,267 + ABZR87_RS00305 0.48 +0.3
62,268 - ABZR87_RS00305 0.48 -0.7
62,268 - ABZR87_RS00305 0.48 -2.0
62,268 - ABZR87_RS00305 0.48 -0.6
62,268 - ABZR87_RS00305 0.48 +0.4
62,268 - ABZR87_RS00305 0.48 -0.1
62,268 - ABZR87_RS00305 0.48 +1.1
62,268 - ABZR87_RS00305 0.48 -0.9
62,268 - ABZR87_RS00305 0.48 -0.0
62,268 - ABZR87_RS00305 0.48 +0.2
62,268 - ABZR87_RS00305 0.48 +3.0
62,268 - ABZR87_RS00305 0.48 -0.5
62,268 - ABZR87_RS00305 0.48 -0.4
62,273 + ABZR87_RS00305 0.48 -1.9
62,273 + ABZR87_RS00305 0.48 +0.1
62,273 + ABZR87_RS00305 0.48 -2.2
62,274 - ABZR87_RS00305 0.48 -0.7
62,274 - ABZR87_RS00305 0.48 -0.8
62,453 + ABZR87_RS00305 0.64 +0.7
62,453 + ABZR87_RS00305 0.64 +0.3
62,454 - ABZR87_RS00305 0.64 +0.9
62,454 - ABZR87_RS00305 0.64 -0.4
62,627 + ABZR87_RS00305 0.80 -1.2
62,627 + ABZR87_RS00305 0.80 -1.3
62,627 + ABZR87_RS00305 0.80 +0.3
62,627 + ABZR87_RS00305 0.80 -0.7
62,627 + ABZR87_RS00305 0.80 -1.1
62,628 - ABZR87_RS00305 0.80 -0.3
62,628 - ABZR87_RS00305 0.80 +0.2
62,628 - ABZR87_RS00305 0.80 -0.2
62,628 - ABZR87_RS00305 0.80 -2.8
62,643 - ABZR87_RS00305 0.81 -0.0
62,643 - ABZR87_RS00305 0.81 -0.9
62,643 - ABZR87_RS00305 0.81 -1.1
62,654 + ABZR87_RS00305 0.82 +0.2
62,655 - ABZR87_RS00305 0.82 -0.1
62,655 - ABZR87_RS00305 0.82 +1.0

Or see this region's nucleotide sequence