Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS21585 and RS_RS21590 are separated by 3 nucleotides RS_RS21590 and RS_RS21595 are separated by 12 nucleotides RS_RS21595 and RS_RS21600 are separated by 117 nucleotides RS_RS21600 and RS_RS21605 are separated by 12 nucleotides
RS_RS21585: RS_RS21585 - amino acid ABC transporter permease, at 1,181,038 to 1,181,784
_RS21585
RS_RS21590: RS_RS21590 - amino acid ABC transporter permease, at 1,181,788 to 1,182,489
_RS21590
RS_RS21595: RS_RS21595 - NAD(P)-dependent oxidoreductase, at 1,182,502 to 1,183,254
_RS21595
RS_RS21600: RS_RS21600 - hypothetical protein, at 1,183,372 to 1,184,154
_RS21600
RS_RS21605: RS_RS21605 - biotin carboxyl carrier protein of acetyl-COA carboxylase, at 1,184,167 to 1,184,598
_RS21605
Position (kb) 1182
1183
1184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1181.534 kb on + strand, within RS_RS21585 at 1181.535 kb on - strand, within RS_RS21585 at 1181.789 kb on + strand at 1181.790 kb on - strand at 1181.790 kb on - strand at 1181.865 kb on - strand, within RS_RS21590 at 1181.865 kb on - strand, within RS_RS21590 at 1181.865 kb on - strand, within RS_RS21590 at 1181.994 kb on + strand, within RS_RS21590 at 1182.147 kb on - strand, within RS_RS21590 at 1182.296 kb on + strand, within RS_RS21590 at 1182.305 kb on + strand, within RS_RS21590 at 1182.305 kb on + strand, within RS_RS21590 at 1182.305 kb on + strand, within RS_RS21590 at 1182.306 kb on - strand, within RS_RS21590 at 1182.674 kb on + strand, within RS_RS21595 at 1182.674 kb on + strand, within RS_RS21595 at 1182.675 kb on - strand, within RS_RS21595 at 1182.821 kb on + strand, within RS_RS21595 at 1182.822 kb on - strand, within RS_RS21595 at 1182.845 kb on + strand, within RS_RS21595 at 1182.845 kb on + strand, within RS_RS21595 at 1182.845 kb on + strand, within RS_RS21595 at 1182.845 kb on + strand, within RS_RS21595 at 1183.238 kb on + strand at 1183.257 kb on + strand at 1183.258 kb on - strand at 1183.258 kb on - strand at 1183.270 kb on + strand at 1183.271 kb on - strand at 1183.285 kb on + strand at 1183.285 kb on + strand at 1183.285 kb on + strand at 1183.285 kb on + strand at 1183.333 kb on - strand at 1183.333 kb on - strand at 1183.344 kb on - strand at 1183.374 kb on - strand at 1183.480 kb on - strand, within RS_RS21600 at 1183.580 kb on - strand, within RS_RS21600 at 1183.889 kb on + strand, within RS_RS21600 at 1183.889 kb on + strand, within RS_RS21600 at 1183.889 kb on + strand, within RS_RS21600 at 1183.889 kb on + strand, within RS_RS21600 at 1183.890 kb on - strand, within RS_RS21600 at 1183.890 kb on - strand, within RS_RS21600 at 1183.890 kb on - strand, within RS_RS21600 at 1183.890 kb on - strand, within RS_RS21600 at 1184.118 kb on - strand at 1184.118 kb on - strand at 1184.176 kb on - strand at 1184.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,181,534 + RS_RS21585 0.66 +1.3 1,181,535 - RS_RS21585 0.67 -1.3 1,181,789 + -3.4 1,181,790 - +0.7 1,181,790 - -1.3 1,181,865 - RS_RS21590 0.11 +0.2 1,181,865 - RS_RS21590 0.11 +1.3 1,181,865 - RS_RS21590 0.11 -2.0 1,181,994 + RS_RS21590 0.29 -0.8 1,182,147 - RS_RS21590 0.51 -1.5 1,182,296 + RS_RS21590 0.72 -1.1 1,182,305 + RS_RS21590 0.74 -0.5 1,182,305 + RS_RS21590 0.74 +0.7 1,182,305 + RS_RS21590 0.74 +0.3 1,182,306 - RS_RS21590 0.74 -0.9 1,182,674 + RS_RS21595 0.23 -0.3 1,182,674 + RS_RS21595 0.23 +1.5 1,182,675 - RS_RS21595 0.23 +1.3 1,182,821 + RS_RS21595 0.42 -0.1 1,182,822 - RS_RS21595 0.42 +1.3 1,182,845 + RS_RS21595 0.46 +0.1 1,182,845 + RS_RS21595 0.46 +0.4 1,182,845 + RS_RS21595 0.46 -1.1 1,182,845 + RS_RS21595 0.46 -0.7 1,183,238 + -1.1 1,183,257 + +1.3 1,183,258 - -0.3 1,183,258 - +0.3 1,183,270 + +0.1 1,183,271 - +1.3 1,183,285 + +0.1 1,183,285 + +1.3 1,183,285 + -1.4 1,183,285 + +0.2 1,183,333 - -0.4 1,183,333 - +1.5 1,183,344 - -0.8 1,183,374 - +1.3 1,183,480 - RS_RS21600 0.14 -1.2 1,183,580 - RS_RS21600 0.27 +1.2 1,183,889 + RS_RS21600 0.66 +1.0 1,183,889 + RS_RS21600 0.66 -0.5 1,183,889 + RS_RS21600 0.66 +0.3 1,183,889 + RS_RS21600 0.66 -0.8 1,183,890 - RS_RS21600 0.66 -1.3 1,183,890 - RS_RS21600 0.66 +1.9 1,183,890 - RS_RS21600 0.66 -0.5 1,183,890 - RS_RS21600 0.66 +0.3 1,184,118 - -0.3 1,184,118 - +1.3 1,184,176 - -1.3 1,184,176 - -0.6
Or see this region's nucleotide sequence