Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18540 and RS_RS18545 are separated by 3 nucleotides RS_RS18545 and RS_RS18550 overlap by 4 nucleotides
RS_RS18540: RS_RS18540 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 372,386 to 374,515
_RS18540
RS_RS18545: RS_RS18545 - poly-beta-1,6 N-acetyl-D-glucosamine synthase, at 374,519 to 375,793
_RS18545
RS_RS18550: RS_RS18550 - hypothetical protein, at 375,790 to 376,779
_RS18550
Position (kb) 374
375
376 Strain fitness (log2 ratio) -2
-1
0
1
2 at 373.568 kb on + strand, within RS_RS18540 at 373.569 kb on - strand, within RS_RS18540 at 373.730 kb on + strand, within RS_RS18540 at 373.730 kb on + strand, within RS_RS18540 at 373.730 kb on + strand, within RS_RS18540 at 373.731 kb on - strand, within RS_RS18540 at 373.748 kb on + strand, within RS_RS18540 at 373.748 kb on + strand, within RS_RS18540 at 373.749 kb on - strand, within RS_RS18540 at 373.749 kb on - strand, within RS_RS18540 at 373.749 kb on - strand, within RS_RS18540 at 373.800 kb on - strand, within RS_RS18540 at 374.081 kb on + strand, within RS_RS18540 at 374.105 kb on + strand, within RS_RS18540 at 374.105 kb on + strand, within RS_RS18540 at 374.105 kb on + strand, within RS_RS18540 at 374.106 kb on - strand, within RS_RS18540 at 374.297 kb on + strand, within RS_RS18540 at 374.298 kb on - strand, within RS_RS18540 at 374.298 kb on - strand, within RS_RS18540 at 374.307 kb on - strand at 374.564 kb on + strand at 374.565 kb on - strand at 374.585 kb on + strand at 374.711 kb on + strand, within RS_RS18545 at 374.712 kb on - strand, within RS_RS18545 at 374.774 kb on + strand, within RS_RS18545 at 374.774 kb on + strand, within RS_RS18545 at 374.774 kb on + strand, within RS_RS18545 at 374.775 kb on - strand, within RS_RS18545 at 375.131 kb on + strand, within RS_RS18545 at 375.131 kb on + strand, within RS_RS18545 at 375.131 kb on + strand, within RS_RS18545 at 375.132 kb on - strand, within RS_RS18545 at 375.201 kb on - strand, within RS_RS18545 at 375.329 kb on + strand, within RS_RS18545 at 375.330 kb on - strand, within RS_RS18545 at 375.330 kb on - strand, within RS_RS18545 at 375.380 kb on + strand, within RS_RS18545 at 375.462 kb on - strand, within RS_RS18545 at 375.638 kb on + strand, within RS_RS18545 at 375.771 kb on + strand at 375.771 kb on + strand at 375.771 kb on + strand at 375.772 kb on - strand at 375.772 kb on - strand at 375.772 kb on - strand at 375.772 kb on - strand at 375.772 kb on - strand at 375.801 kb on - strand at 375.937 kb on + strand, within RS_RS18550 at 375.937 kb on + strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 376.001 kb on - strand, within RS_RS18550 at 376.585 kb on + strand, within RS_RS18550 at 376.585 kb on + strand, within RS_RS18550
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 373,568 + RS_RS18540 0.55 +1.2 373,569 - RS_RS18540 0.56 -2.6 373,730 + RS_RS18540 0.63 +1.6 373,730 + RS_RS18540 0.63 -2.2 373,730 + RS_RS18540 0.63 +0.3 373,731 - RS_RS18540 0.63 +0.0 373,748 + RS_RS18540 0.64 +1.6 373,748 + RS_RS18540 0.64 -0.6 373,749 - RS_RS18540 0.64 +1.6 373,749 - RS_RS18540 0.64 +1.6 373,749 - RS_RS18540 0.64 +0.2 373,800 - RS_RS18540 0.66 -0.3 374,081 + RS_RS18540 0.80 -1.2 374,105 + RS_RS18540 0.81 -1.4 374,105 + RS_RS18540 0.81 +0.1 374,105 + RS_RS18540 0.81 -0.1 374,106 - RS_RS18540 0.81 -1.2 374,297 + RS_RS18540 0.90 -0.2 374,298 - RS_RS18540 0.90 -1.1 374,298 - RS_RS18540 0.90 +1.6 374,307 - +0.6 374,564 + -1.0 374,565 - +1.6 374,585 + -2.0 374,711 + RS_RS18545 0.15 +1.6 374,712 - RS_RS18545 0.15 -0.5 374,774 + RS_RS18545 0.20 +0.7 374,774 + RS_RS18545 0.20 -0.6 374,774 + RS_RS18545 0.20 -1.7 374,775 - RS_RS18545 0.20 -0.4 375,131 + RS_RS18545 0.48 -0.6 375,131 + RS_RS18545 0.48 -0.2 375,131 + RS_RS18545 0.48 +1.6 375,132 - RS_RS18545 0.48 +1.6 375,201 - RS_RS18545 0.53 -1.4 375,329 + RS_RS18545 0.64 +0.9 375,330 - RS_RS18545 0.64 +0.1 375,330 - RS_RS18545 0.64 +0.4 375,380 + RS_RS18545 0.68 +0.6 375,462 - RS_RS18545 0.74 +0.5 375,638 + RS_RS18545 0.88 +0.4 375,771 + +0.7 375,771 + +1.6 375,771 + -1.8 375,772 - +1.6 375,772 - +0.9 375,772 - -1.5 375,772 - -2.0 375,772 - -1.7 375,801 - +2.0 375,937 + RS_RS18550 0.15 -1.2 375,937 + RS_RS18550 0.15 -0.3 375,938 - RS_RS18550 0.15 -0.2 375,938 - RS_RS18550 0.15 +1.6 375,938 - RS_RS18550 0.15 +0.6 375,938 - RS_RS18550 0.15 -0.4 375,938 - RS_RS18550 0.15 -0.4 376,001 - RS_RS18550 0.21 -0.5 376,585 + RS_RS18550 0.80 -0.4 376,585 + RS_RS18550 0.80 +0.6
Or see this region's nucleotide sequence