Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18150 and RS_RS18155 are separated by 588 nucleotides RS_RS18155 and RS_RS18160 are separated by 126 nucleotides RS_RS18160 and RS_RS18165 are separated by 231 nucleotides
RS_RS18150: RS_RS18150 - hypothetical protein, at 256,198 to 257,904
_RS18150
RS_RS18155: RS_RS18155 - phytanoyl-CoA dioxygenase, at 258,493 to 259,284
_RS18155
RS_RS18160: RS_RS18160 - hypothetical protein, at 259,411 to 259,632
_RS18160
RS_RS18165: RS_RS18165 - DUF2141 domain-containing protein, at 259,864 to 260,310
_RS18165
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.591 kb on + strand, within RS_RS18150 at 257.591 kb on + strand, within RS_RS18150 at 257.591 kb on + strand, within RS_RS18150 at 257.591 kb on + strand, within RS_RS18150 at 257.591 kb on + strand, within RS_RS18150 at 257.592 kb on - strand, within RS_RS18150 at 257.592 kb on - strand, within RS_RS18150 at 257.623 kb on + strand, within RS_RS18150 at 257.623 kb on + strand, within RS_RS18150 at 257.623 kb on + strand, within RS_RS18150 at 257.624 kb on - strand, within RS_RS18150 at 257.644 kb on - strand, within RS_RS18150 at 257.663 kb on + strand, within RS_RS18150 at 257.663 kb on + strand, within RS_RS18150 at 257.897 kb on + strand at 257.897 kb on + strand at 257.897 kb on + strand at 257.897 kb on + strand at 257.898 kb on - strand at 257.970 kb on + strand at 258.026 kb on + strand at 258.026 kb on + strand at 258.066 kb on - strand at 258.098 kb on + strand at 258.098 kb on + strand at 258.098 kb on + strand at 258.099 kb on - strand at 258.099 kb on - strand at 258.099 kb on - strand at 258.099 kb on - strand at 258.099 kb on - strand at 258.131 kb on + strand at 258.222 kb on + strand at 258.232 kb on + strand at 258.232 kb on + strand at 258.233 kb on - strand at 258.233 kb on - strand at 258.323 kb on + strand at 258.441 kb on + strand at 258.441 kb on + strand at 258.571 kb on + strand at 258.571 kb on + strand at 258.685 kb on + strand, within RS_RS18155 at 258.919 kb on + strand, within RS_RS18155 at 259.191 kb on + strand, within RS_RS18155 at 259.213 kb on + strand at 259.213 kb on + strand at 259.213 kb on + strand at 259.214 kb on - strand at 259.214 kb on - strand at 259.214 kb on - strand at 259.216 kb on + strand at 259.217 kb on - strand at 259.217 kb on - strand at 259.217 kb on - strand at 259.334 kb on + strand at 259.334 kb on + strand at 259.335 kb on - strand at 259.335 kb on - strand at 259.373 kb on + strand at 259.373 kb on + strand at 259.374 kb on - strand at 259.526 kb on - strand, within RS_RS18160 at 259.805 kb on + strand at 259.806 kb on - strand at 260.104 kb on + strand, within RS_RS18165 at 260.105 kb on - strand, within RS_RS18165
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 257,591 + RS_RS18150 0.82 +1.6 257,591 + RS_RS18150 0.82 -1.6 257,591 + RS_RS18150 0.82 -0.2 257,591 + RS_RS18150 0.82 -0.2 257,591 + RS_RS18150 0.82 -0.8 257,592 - RS_RS18150 0.82 +0.2 257,592 - RS_RS18150 0.82 +0.3 257,623 + RS_RS18150 0.83 +0.2 257,623 + RS_RS18150 0.83 -1.9 257,623 + RS_RS18150 0.83 +0.7 257,624 - RS_RS18150 0.84 -1.0 257,644 - RS_RS18150 0.85 -0.1 257,663 + RS_RS18150 0.86 -0.9 257,663 + RS_RS18150 0.86 +1.6 257,897 + -0.4 257,897 + -0.5 257,897 + -1.1 257,897 + -1.1 257,898 - +1.6 257,970 + -0.3 258,026 + -1.1 258,026 + -0.9 258,066 - +0.3 258,098 + +0.7 258,098 + -1.2 258,098 + -0.0 258,099 - +0.6 258,099 - +1.6 258,099 - +0.6 258,099 - +1.6 258,099 - -0.1 258,131 + +1.4 258,222 + +1.9 258,232 + -1.0 258,232 + -2.0 258,233 - +0.2 258,233 - +1.6 258,323 + +0.1 258,441 + +0.1 258,441 + +1.6 258,571 + -0.0 258,571 + -0.5 258,685 + RS_RS18155 0.24 +1.6 258,919 + RS_RS18155 0.54 -0.0 259,191 + RS_RS18155 0.88 +0.7 259,213 + -0.9 259,213 + -0.3 259,213 + +0.6 259,214 - +0.2 259,214 - -0.3 259,214 - +0.0 259,216 + +0.4 259,217 - -1.7 259,217 - -0.3 259,217 - +0.1 259,334 + -0.0 259,334 + -0.4 259,335 - +1.6 259,335 - +0.8 259,373 + -0.8 259,373 + -0.7 259,374 - +1.6 259,526 - RS_RS18160 0.52 -0.1 259,805 + -1.0 259,806 - -0.0 260,104 + RS_RS18165 0.54 -0.7 260,105 - RS_RS18165 0.54 -0.1
Or see this region's nucleotide sequence