Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18080 and RS_RS18085 are separated by 122 nucleotides RS_RS18085 and RS_RS18090 are separated by 15 nucleotides RS_RS18090 and RS_RS18095 are separated by 145 nucleotides
RS_RS18080: RS_RS18080 - beta-ketoacyl-ACP synthase III, at 239,448 to 240,569
_RS18080
RS_RS18085: RS_RS18085 - hypothetical protein, at 240,692 to 241,069
_RS18085
RS_RS18090: RS_RS18090 - prolyl aminopeptidase, at 241,085 to 242,047
_RS18090
RS_RS18095: RS_RS18095 - gamma subclass chorismate mutase AroQ, at 242,193 to 242,783
_RS18095
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 240.367 kb on + strand, within RS_RS18080 at 240.368 kb on - strand, within RS_RS18080 at 240.470 kb on - strand at 240.481 kb on + strand at 240.570 kb on - strand at 240.570 kb on - strand at 240.570 kb on - strand at 240.570 kb on - strand at 240.574 kb on + strand at 240.574 kb on + strand at 240.574 kb on + strand at 240.574 kb on + strand at 240.575 kb on - strand at 240.575 kb on - strand at 240.575 kb on - strand at 240.575 kb on - strand at 240.575 kb on - strand at 240.575 kb on - strand at 240.605 kb on + strand at 240.605 kb on + strand at 240.606 kb on - strand at 241.063 kb on - strand at 241.218 kb on + strand, within RS_RS18090 at 241.218 kb on + strand, within RS_RS18090 at 241.341 kb on + strand, within RS_RS18090 at 241.341 kb on + strand, within RS_RS18090 at 241.341 kb on + strand, within RS_RS18090 at 241.341 kb on + strand, within RS_RS18090 at 241.341 kb on + strand, within RS_RS18090 at 241.342 kb on - strand, within RS_RS18090 at 241.342 kb on - strand, within RS_RS18090 at 241.342 kb on - strand, within RS_RS18090 at 241.599 kb on + strand, within RS_RS18090 at 241.599 kb on + strand, within RS_RS18090 at 241.599 kb on + strand, within RS_RS18090 at 241.599 kb on + strand, within RS_RS18090 at 241.599 kb on + strand, within RS_RS18090 at 241.600 kb on - strand, within RS_RS18090 at 241.600 kb on - strand, within RS_RS18090 at 241.602 kb on + strand, within RS_RS18090 at 241.603 kb on - strand, within RS_RS18090 at 241.632 kb on + strand, within RS_RS18090 at 241.633 kb on - strand, within RS_RS18090 at 241.684 kb on - strand, within RS_RS18090 at 241.857 kb on + strand, within RS_RS18090 at 241.858 kb on - strand, within RS_RS18090 at 241.962 kb on + strand at 241.962 kb on + strand at 241.962 kb on + strand at 241.963 kb on - strand at 241.963 kb on - strand at 241.963 kb on - strand at 241.963 kb on - strand at 241.965 kb on + strand at 242.007 kb on + strand at 242.007 kb on + strand at 242.008 kb on - strand at 242.008 kb on - strand at 242.086 kb on - strand at 242.135 kb on + strand at 242.135 kb on + strand at 242.192 kb on + strand at 242.392 kb on - strand, within RS_RS18095 at 242.518 kb on - strand, within RS_RS18095 at 242.518 kb on - strand, within RS_RS18095
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 240,367 + RS_RS18080 0.82 +0.4 240,368 - RS_RS18080 0.82 +0.8 240,470 - -0.2 240,481 + -0.3 240,570 - +1.6 240,570 - -0.3 240,570 - +0.2 240,570 - -0.6 240,574 + -0.7 240,574 + +1.6 240,574 + -0.9 240,574 + -0.7 240,575 - +0.7 240,575 - -1.2 240,575 - -0.6 240,575 - +3.0 240,575 - +1.7 240,575 - -1.7 240,605 + +0.0 240,605 + -0.5 240,606 - -1.6 241,063 - +0.3 241,218 + RS_RS18090 0.14 +1.6 241,218 + RS_RS18090 0.14 -2.1 241,341 + RS_RS18090 0.27 -1.3 241,341 + RS_RS18090 0.27 -0.2 241,341 + RS_RS18090 0.27 -0.8 241,341 + RS_RS18090 0.27 -0.6 241,341 + RS_RS18090 0.27 +0.3 241,342 - RS_RS18090 0.27 -0.0 241,342 - RS_RS18090 0.27 +1.0 241,342 - RS_RS18090 0.27 +0.3 241,599 + RS_RS18090 0.53 -0.4 241,599 + RS_RS18090 0.53 -1.2 241,599 + RS_RS18090 0.53 +1.6 241,599 + RS_RS18090 0.53 +0.6 241,599 + RS_RS18090 0.53 +0.6 241,600 - RS_RS18090 0.53 -1.1 241,600 - RS_RS18090 0.53 -0.0 241,602 + RS_RS18090 0.54 +0.0 241,603 - RS_RS18090 0.54 -1.5 241,632 + RS_RS18090 0.57 -1.4 241,633 - RS_RS18090 0.57 -0.7 241,684 - RS_RS18090 0.62 +0.1 241,857 + RS_RS18090 0.80 +0.0 241,858 - RS_RS18090 0.80 -0.7 241,962 + -0.9 241,962 + +1.6 241,962 + +1.6 241,963 - -1.2 241,963 - +0.2 241,963 - +1.6 241,963 - +0.1 241,965 + +3.8 242,007 + -0.1 242,007 + -0.8 242,008 - +0.4 242,008 - +4.5 242,086 - -1.0 242,135 + -0.6 242,135 + +1.6 242,192 + -0.9 242,392 - RS_RS18095 0.34 +0.9 242,518 - RS_RS18095 0.55 +0.0 242,518 - RS_RS18095 0.55 -0.2
Or see this region's nucleotide sequence