Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS14365

Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS14355 and RS_RS14360 are separated by 422 nucleotidesRS_RS14360 and RS_RS14365 are separated by 113 nucleotidesRS_RS14365 and RS_RS14370 are separated by 247 nucleotidesRS_RS14370 and RS_RS14375 are separated by 36 nucleotidesRS_RS14375 and RS_RS14380 are separated by 55 nucleotides RS_RS14355: RS_RS14355 - amidohydrolase, at 3,094,267 to 3,095,457 _RS14355 RS_RS14360: RS_RS14360 - 5S ribosomal RNA, at 3,095,880 to 3,095,992 _RS14360 RS_RS14365: RS_RS14365 - 23S ribosomal RNA, at 3,096,106 to 3,098,997 _RS14365 RS_RS14370: RS_RS14370 - tRNA-Ala, at 3,099,245 to 3,099,320 _RS14370 RS_RS14375: RS_RS14375 - tRNA-Ile, at 3,099,357 to 3,099,433 _RS14375 RS_RS14380: RS_RS14380 - 16S ribosomal RNA, at 3,099,489 to 3,101,033 _RS14380 Position (kb) 3096 3097 3098 3099Strain fitness (log2 ratio) -1 0 1 2at 3095.147 kb on - strand, within RS_RS14355at 3095.417 kb on - strandat 3095.559 kb on + strandat 3097.996 kb on - strand, within RS_RS14365

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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3,095,147 - RS_RS14355 0.74 +1.9
3,095,417 - +0.6
3,095,559 + +0.3
3,097,996 - RS_RS14365 0.65 -0.9

Or see this region's nucleotide sequence