Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10410

Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS10400 and RS_RS10405 are separated by 13 nucleotidesRS_RS10405 and RS_RS10410 are separated by 148 nucleotidesRS_RS10410 and RS_RS10415 are separated by 55 nucleotidesRS_RS10415 and RS_RS10420 overlap by 1 nucleotides RS_RS10400: RS_RS10400 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 2,246,579 to 2,247,454 _RS10400 RS_RS10405: RS_RS10405 - phosphatidylserine decarboxylase proenzyme, at 2,247,468 to 2,248,115 _RS10405 RS_RS10410: RS_RS10410 - ketol-acid reductoisomerase, at 2,248,264 to 2,249,280 _RS10410 RS_RS10415: RS_RS10415 - acetolactate synthase small subunit, at 2,249,336 to 2,249,827 _RS10415 RS_RS10420: RS_RS10420 - acetolactate synthase 3 large subunit, at 2,249,827 to 2,251,584 _RS10420 Position (kb) 2248 2249 2250Strain fitness (log2 ratio) -1 0 1at 2248.158 kb on - strandat 2249.303 kb on - strandat 2249.303 kb on - strandat 2249.303 kb on - strandat 2249.470 kb on - strand, within RS_RS10415

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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2,248,158 - +1.5
2,249,303 - -0.9
2,249,303 - -0.2
2,249,303 - -0.8
2,249,470 - RS_RS10415 0.27 +1.5

Or see this region's nucleotide sequence