Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06640 and RS_RS06645 are separated by 4 nucleotides RS_RS06645 and RS_RS06650 are separated by 333 nucleotides RS_RS06650 and RS_RS06655 are separated by 90 nucleotides
RS_RS06640: RS_RS06640 - glycosyltransferase family 39 protein, at 1,408,817 to 1,410,487
_RS06640
RS_RS06645: RS_RS06645 - hypothetical protein, at 1,410,492 to 1,410,872
_RS06645
RS_RS06650: RS_RS06650 - pyridoxal phosphate-dependent aminotransferase, at 1,411,206 to 1,412,447
_RS06650
RS_RS06655: RS_RS06655 - homoserine dehydrogenase, at 1,412,538 to 1,413,857
_RS06655
Position (kb) 1411
1412
1413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1410.235 kb on - strand, within RS_RS06640 at 1410.348 kb on + strand at 1410.809 kb on - strand, within RS_RS06645 at 1411.039 kb on + strand at 1411.641 kb on + strand, within RS_RS06650 at 1411.758 kb on + strand, within RS_RS06650 at 1411.929 kb on + strand, within RS_RS06650 at 1412.145 kb on + strand, within RS_RS06650 at 1412.202 kb on + strand, within RS_RS06650 at 1412.232 kb on + strand, within RS_RS06650
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,410,235 - RS_RS06640 0.85 -1.6 1,410,348 + -0.6 1,410,809 - RS_RS06645 0.83 +0.4 1,411,039 + +1.4 1,411,641 + RS_RS06650 0.35 -3.2 1,411,758 + RS_RS06650 0.44 -3.2 1,411,929 + RS_RS06650 0.58 -0.9 1,412,145 + RS_RS06650 0.76 +1.9 1,412,202 + RS_RS06650 0.80 -1.7 1,412,232 + RS_RS06650 0.83 -3.0
Or see this region's nucleotide sequence