Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06365

Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06360 and RS_RS06365 are separated by 139 nucleotidesRS_RS06365 and RS_RS06370 are separated by 70 nucleotides RS_RS06360: RS_RS06360 - 2-oxoglutarate dehydrogenase E1 component, at 1,348,620 to 1,351,481 _RS06360 RS_RS06365: RS_RS06365 - dihydrolipoyllysine-residue succinyltransferase, at 1,351,621 to 1,352,877 _RS06365 RS_RS06370: RS_RS06370 - dihydrolipoyl dehydrogenase, at 1,352,948 to 1,354,384 _RS06370 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -1 0 1at 1351.479 kb on + strandat 1351.553 kb on + strandat 1351.553 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,351,479 + -0.9
1,351,553 + +1.3
1,351,553 + -0.8

Or see this region's nucleotide sequence