Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04645 and RS_RS04650 are separated by 23 nucleotides RS_RS04650 and RS_RS04655 are separated by 73 nucleotides RS_RS04655 and RS_RS04660 are separated by 113 nucleotides RS_RS04660 and RS_RS04665 are separated by 95 nucleotides
RS_RS04645: RS_RS04645 - ribosome maturation factor RimM, at 984,546 to 985,187
_RS04645
RS_RS04650: RS_RS04650 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 985,211 to 985,999
_RS04650
RS_RS04655: RS_RS04655 - 50S ribosomal protein L19, at 986,073 to 986,459
_RS04655
RS_RS04660: RS_RS04660 - CoA pyrophosphatase, at 986,573 to 987,256
_RS04660
RS_RS04665: RS_RS04665 - cobalamin biosynthesis protein CobD, at 987,352 to 988,293
_RS04665
Position (kb) 986
987 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 986.458 kb on - strand at 986.713 kb on + strand, within RS_RS04660 at 986.979 kb on - strand, within RS_RS04660 at 986.979 kb on - strand, within RS_RS04660 at 987.158 kb on + strand, within RS_RS04660 at 987.158 kb on + strand, within RS_RS04660 at 987.195 kb on - strand at 987.237 kb on - strand at 987.298 kb on - strand at 987.305 kb on - strand at 987.424 kb on + strand at 987.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 986,458 - +0.5 986,713 + RS_RS04660 0.20 -0.0 986,979 - RS_RS04660 0.59 -0.1 986,979 - RS_RS04660 0.59 +0.7 987,158 + RS_RS04660 0.86 -0.7 987,158 + RS_RS04660 0.86 -0.1 987,195 - -0.0 987,237 - -0.8 987,298 - +0.3 987,305 - +2.4 987,424 + +1.5 987,425 - +3.9
Or see this region's nucleotide sequence