Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03845 and RS_RS03850 are separated by 219 nucleotides RS_RS03850 and RS_RS03855 are separated by 28 nucleotides RS_RS03855 and RS_RS03860 are separated by 4 nucleotides
RS_RS03845: RS_RS03845 - flavin reductase, at 805,570 to 806,145
_RS03845
RS_RS03850: RS_RS03850 - peptide-methionine (S)-S-oxide reductase, at 806,365 to 806,925
_RS03850
RS_RS03855: RS_RS03855 - DUF72 domain-containing protein, at 806,954 to 808,021
_RS03855
RS_RS03860: RS_RS03860 - class I SAM-dependent methyltransferase, at 808,026 to 809,246
_RS03860
Position (kb) 806
807
808
809 Strain fitness (log2 ratio) -2
-1
0
1 at 806.503 kb on + strand, within RS_RS03850 at 806.504 kb on - strand, within RS_RS03850 at 806.659 kb on + strand, within RS_RS03850 at 806.827 kb on + strand, within RS_RS03850 at 806.854 kb on + strand, within RS_RS03850 at 806.854 kb on + strand, within RS_RS03850 at 806.855 kb on - strand, within RS_RS03850 at 806.855 kb on - strand, within RS_RS03850 at 806.855 kb on - strand, within RS_RS03850 at 807.292 kb on - strand, within RS_RS03855 at 807.675 kb on + strand, within RS_RS03855 at 807.685 kb on - strand, within RS_RS03855 at 807.708 kb on + strand, within RS_RS03855 at 807.708 kb on + strand, within RS_RS03855 at 807.708 kb on + strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.709 kb on - strand, within RS_RS03855 at 807.831 kb on + strand, within RS_RS03855 at 808.033 kb on + strand at 808.033 kb on + strand at 808.033 kb on + strand at 808.037 kb on + strand at 808.037 kb on + strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.038 kb on - strand at 808.039 kb on + strand at 808.039 kb on + strand at 808.040 kb on - strand at 808.041 kb on - strand at 808.246 kb on + strand, within RS_RS03860 at 808.348 kb on + strand, within RS_RS03860 at 808.348 kb on + strand, within RS_RS03860 at 808.808 kb on - strand, within RS_RS03860 at 808.808 kb on - strand, within RS_RS03860 at 808.808 kb on - strand, within RS_RS03860 at 808.819 kb on + strand, within RS_RS03860 at 808.820 kb on - strand, within RS_RS03860 at 808.849 kb on + strand, within RS_RS03860 at 808.850 kb on - strand, within RS_RS03860
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 806,503 + RS_RS03850 0.25 +0.0 806,504 - RS_RS03850 0.25 +0.7 806,659 + RS_RS03850 0.52 -1.0 806,827 + RS_RS03850 0.82 -0.7 806,854 + RS_RS03850 0.87 -0.1 806,854 + RS_RS03850 0.87 +0.3 806,855 - RS_RS03850 0.87 -0.3 806,855 - RS_RS03850 0.87 -0.7 806,855 - RS_RS03850 0.87 -0.3 807,292 - RS_RS03855 0.32 -0.5 807,675 + RS_RS03855 0.68 +0.2 807,685 - RS_RS03855 0.68 +0.9 807,708 + RS_RS03855 0.71 +0.1 807,708 + RS_RS03855 0.71 +1.1 807,708 + RS_RS03855 0.71 -0.5 807,709 - RS_RS03855 0.71 +0.1 807,709 - RS_RS03855 0.71 +1.7 807,709 - RS_RS03855 0.71 -0.3 807,709 - RS_RS03855 0.71 -1.3 807,831 + RS_RS03855 0.82 +0.1 808,033 + +0.3 808,033 + +0.7 808,033 + +0.5 808,037 + -0.3 808,037 + -0.6 808,038 - -1.0 808,038 - -2.3 808,038 - -0.9 808,038 - -0.6 808,038 - +0.1 808,038 - +0.1 808,039 + -0.8 808,039 + -0.1 808,040 - +0.1 808,041 - -1.1 808,246 + RS_RS03860 0.18 -0.2 808,348 + RS_RS03860 0.26 -0.9 808,348 + RS_RS03860 0.26 -1.8 808,808 - RS_RS03860 0.64 +0.1 808,808 - RS_RS03860 0.64 -0.0 808,808 - RS_RS03860 0.64 +0.9 808,819 + RS_RS03860 0.65 -0.7 808,820 - RS_RS03860 0.65 -1.4 808,849 + RS_RS03860 0.67 -1.8 808,850 - RS_RS03860 0.67 +1.3
Or see this region's nucleotide sequence