Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00840 and RS_RS00845 are separated by 13 nucleotides RS_RS00845 and RS_RS00850 overlap by 4 nucleotides RS_RS00850 and RS_RS00855 are separated by 3 nucleotides
RS_RS00840: RS_RS00840 - hypothetical protein, at 190,677 to 192,380
_RS00840
RS_RS00845: RS_RS00845 - short-chain dehydrogenase, at 192,394 to 193,134
_RS00845
RS_RS00850: RS_RS00850 - FAD-binding oxidoreductase, at 193,131 to 194,447
_RS00850
RS_RS00855: RS_RS00855 - membrane protein, at 194,451 to 195,875
_RS00855
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 192.145 kb on + strand, within RS_RS00840 at 192.146 kb on - strand, within RS_RS00840 at 192.146 kb on - strand, within RS_RS00840 at 192.146 kb on - strand, within RS_RS00840 at 192.150 kb on + strand, within RS_RS00840 at 192.150 kb on + strand, within RS_RS00840 at 192.150 kb on + strand, within RS_RS00840 at 192.150 kb on + strand, within RS_RS00840 at 192.151 kb on - strand, within RS_RS00840 at 192.245 kb on - strand at 192.245 kb on - strand at 192.329 kb on + strand at 192.330 kb on - strand at 192.330 kb on - strand at 192.330 kb on - strand at 192.356 kb on - strand at 192.396 kb on - strand at 192.474 kb on - strand, within RS_RS00845 at 192.474 kb on - strand, within RS_RS00845 at 192.684 kb on - strand, within RS_RS00845 at 192.690 kb on - strand, within RS_RS00845 at 192.690 kb on - strand, within RS_RS00845 at 193.573 kb on + strand, within RS_RS00850 at 193.583 kb on - strand, within RS_RS00850 at 193.583 kb on - strand, within RS_RS00850 at 193.628 kb on - strand, within RS_RS00850 at 193.628 kb on - strand, within RS_RS00850 at 193.810 kb on + strand, within RS_RS00850 at 193.810 kb on + strand, within RS_RS00850 at 193.810 kb on + strand, within RS_RS00850 at 194.123 kb on - strand, within RS_RS00850 at 194.295 kb on - strand, within RS_RS00850 at 194.420 kb on - strand at 194.472 kb on - strand at 194.515 kb on - strand at 194.584 kb on + strand at 194.585 kb on - strand at 194.585 kb on - strand at 194.658 kb on - strand, within RS_RS00855 at 194.659 kb on + strand, within RS_RS00855 at 194.659 kb on + strand, within RS_RS00855 at 194.660 kb on - strand, within RS_RS00855 at 194.660 kb on - strand, within RS_RS00855 at 194.795 kb on - strand, within RS_RS00855 at 194.902 kb on + strand, within RS_RS00855 at 194.903 kb on - strand, within RS_RS00855 at 194.977 kb on + strand, within RS_RS00855 at 194.977 kb on + strand, within RS_RS00855 at 194.977 kb on + strand, within RS_RS00855 at 194.977 kb on + strand, within RS_RS00855 at 194.981 kb on - strand, within RS_RS00855 at 195.166 kb on + strand, within RS_RS00855 at 195.167 kb on - strand, within RS_RS00855 at 195.409 kb on + strand, within RS_RS00855 at 195.409 kb on + strand, within RS_RS00855 at 195.410 kb on - strand, within RS_RS00855 at 195.410 kb on - strand, within RS_RS00855
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 192,145 + RS_RS00840 0.86 -0.4 192,146 - RS_RS00840 0.86 -0.8 192,146 - RS_RS00840 0.86 -0.7 192,146 - RS_RS00840 0.86 -1.4 192,150 + RS_RS00840 0.86 -0.1 192,150 + RS_RS00840 0.86 -0.3 192,150 + RS_RS00840 0.86 -0.3 192,150 + RS_RS00840 0.86 +0.2 192,151 - RS_RS00840 0.87 -2.8 192,245 - +0.9 192,245 - -0.0 192,329 + -0.9 192,330 - -0.7 192,330 - -0.3 192,330 - -1.5 192,356 - -0.4 192,396 - +1.0 192,474 - RS_RS00845 0.11 +0.9 192,474 - RS_RS00845 0.11 +1.9 192,684 - RS_RS00845 0.39 -1.1 192,690 - RS_RS00845 0.40 +1.9 192,690 - RS_RS00845 0.40 +1.3 193,573 + RS_RS00850 0.34 -0.4 193,583 - RS_RS00850 0.34 +1.9 193,583 - RS_RS00850 0.34 +1.9 193,628 - RS_RS00850 0.38 -1.8 193,628 - RS_RS00850 0.38 -0.4 193,810 + RS_RS00850 0.52 +1.4 193,810 + RS_RS00850 0.52 -0.1 193,810 + RS_RS00850 0.52 +1.9 194,123 - RS_RS00850 0.75 +3.5 194,295 - RS_RS00850 0.88 +0.3 194,420 - +1.9 194,472 - -0.2 194,515 - -0.3 194,584 + +1.9 194,585 - -2.0 194,585 - +1.9 194,658 - RS_RS00855 0.15 +0.9 194,659 + RS_RS00855 0.15 -0.9 194,659 + RS_RS00855 0.15 +1.9 194,660 - RS_RS00855 0.15 +0.5 194,660 - RS_RS00855 0.15 +1.9 194,795 - RS_RS00855 0.24 +1.7 194,902 + RS_RS00855 0.32 +1.9 194,903 - RS_RS00855 0.32 +2.9 194,977 + RS_RS00855 0.37 -0.8 194,977 + RS_RS00855 0.37 +0.9 194,977 + RS_RS00855 0.37 +1.9 194,977 + RS_RS00855 0.37 +1.9 194,981 - RS_RS00855 0.37 +0.6 195,166 + RS_RS00855 0.50 +0.6 195,167 - RS_RS00855 0.50 -1.0 195,409 + RS_RS00855 0.67 +0.6 195,409 + RS_RS00855 0.67 +1.9 195,410 - RS_RS00855 0.67 -1.5 195,410 - RS_RS00855 0.67 -0.4
Or see this region's nucleotide sequence