Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00195 and RS_RS00200 are separated by 46 nucleotides RS_RS00200 and RS_RS00205 are separated by 197 nucleotides RS_RS00205 and RS_RS00210 are separated by 217 nucleotides
RS_RS00195: RS_RS00195 - sensor histidine kinase, at 41,881 to 43,227
_RS00195
RS_RS00200: RS_RS00200 - DNA-binding response regulator, at 43,274 to 43,852
_RS00200
RS_RS00205: RS_RS00205 - hypothetical protein, at 44,050 to 45,342
_RS00205
RS_RS00210: RS_RS00210 - HslU--HslV peptidase ATPase subunit, at 45,560 to 46,891
_RS00210
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 43.072 kb on + strand, within RS_RS00195 at 43.073 kb on - strand, within RS_RS00195 at 43.176 kb on + strand at 43.176 kb on + strand at 43.176 kb on + strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.177 kb on - strand at 43.425 kb on - strand, within RS_RS00200 at 43.425 kb on - strand, within RS_RS00200 at 43.425 kb on - strand, within RS_RS00200 at 43.610 kb on + strand, within RS_RS00200 at 43.611 kb on - strand, within RS_RS00200 at 43.850 kb on + strand at 43.851 kb on - strand at 43.851 kb on - strand at 43.851 kb on - strand at 44.020 kb on + strand at 44.021 kb on - strand at 44.039 kb on + strand at 44.039 kb on + strand at 44.039 kb on + strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.040 kb on - strand at 44.046 kb on - strand at 44.046 kb on - strand at 44.046 kb on - strand at 44.046 kb on - strand at 44.058 kb on + strand at 44.059 kb on - strand at 44.059 kb on - strand at 44.059 kb on - strand at 44.112 kb on - strand at 44.281 kb on + strand, within RS_RS00205 at 44.281 kb on + strand, within RS_RS00205 at 44.462 kb on + strand, within RS_RS00205 at 44.608 kb on + strand, within RS_RS00205 at 44.609 kb on - strand, within RS_RS00205 at 44.761 kb on + strand, within RS_RS00205 at 44.762 kb on - strand, within RS_RS00205 at 44.762 kb on - strand, within RS_RS00205 at 44.875 kb on + strand, within RS_RS00205 at 44.876 kb on - strand, within RS_RS00205 at 44.876 kb on - strand, within RS_RS00205 at 44.876 kb on - strand, within RS_RS00205 at 44.876 kb on - strand, within RS_RS00205 at 44.876 kb on - strand, within RS_RS00205 at 44.959 kb on - strand, within RS_RS00205 at 45.025 kb on + strand, within RS_RS00205 at 45.026 kb on - strand, within RS_RS00205 at 45.026 kb on - strand, within RS_RS00205 at 45.100 kb on + strand, within RS_RS00205 at 45.100 kb on + strand, within RS_RS00205 at 45.561 kb on + strand at 45.561 kb on + strand at 45.570 kb on + strand at 45.570 kb on + strand at 45.571 kb on - strand at 45.621 kb on + strand at 45.705 kb on + strand, within RS_RS00210 at 45.706 kb on - strand, within RS_RS00210 at 45.706 kb on - strand, within RS_RS00210 at 45.706 kb on - strand, within RS_RS00210 at 45.828 kb on + strand, within RS_RS00210 at 45.828 kb on + strand, within RS_RS00210 at 45.829 kb on - strand, within RS_RS00210 at 45.829 kb on - strand, within RS_RS00210 at 46.009 kb on + strand, within RS_RS00210 at 46.011 kb on + strand, within RS_RS00210 at 46.012 kb on - strand, within RS_RS00210
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 43,072 + RS_RS00195 0.88 -0.2 43,073 - RS_RS00195 0.88 -0.4 43,176 + -0.4 43,176 + +1.9 43,176 + -0.7 43,177 - -1.2 43,177 - +1.1 43,177 - +1.9 43,425 - RS_RS00200 0.26 +0.9 43,425 - RS_RS00200 0.26 +1.9 43,425 - RS_RS00200 0.26 -2.5 43,610 + RS_RS00200 0.58 -0.2 43,611 - RS_RS00200 0.58 -0.4 43,850 + +4.9 43,851 - -1.5 43,851 - +0.5 43,851 - -0.2 44,020 + -0.4 44,021 - -0.6 44,039 + -1.2 44,039 + +3.1 44,039 + +0.0 44,040 - +1.8 44,040 - +0.9 44,040 - -2.9 44,040 - -0.0 44,040 - -0.8 44,040 - +0.1 44,040 - -0.1 44,040 - -1.6 44,040 - +0.4 44,040 - -0.9 44,040 - -0.9 44,040 - +0.1 44,040 - +1.9 44,046 - -1.2 44,046 - +1.9 44,046 - +2.0 44,046 - -1.2 44,058 + -1.8 44,059 - +1.7 44,059 - +0.3 44,059 - -0.3 44,112 - -0.3 44,281 + RS_RS00205 0.18 -0.5 44,281 + RS_RS00205 0.18 +0.7 44,462 + RS_RS00205 0.32 +0.9 44,608 + RS_RS00205 0.43 +1.9 44,609 - RS_RS00205 0.43 +0.9 44,761 + RS_RS00205 0.55 -0.9 44,762 - RS_RS00205 0.55 -0.5 44,762 - RS_RS00205 0.55 +0.9 44,875 + RS_RS00205 0.64 +0.3 44,876 - RS_RS00205 0.64 -1.0 44,876 - RS_RS00205 0.64 -1.5 44,876 - RS_RS00205 0.64 +0.8 44,876 - RS_RS00205 0.64 +1.9 44,876 - RS_RS00205 0.64 -0.8 44,959 - RS_RS00205 0.70 -0.9 45,025 + RS_RS00205 0.75 -1.1 45,026 - RS_RS00205 0.75 -1.4 45,026 - RS_RS00205 0.75 -0.6 45,100 + RS_RS00205 0.81 +0.9 45,100 + RS_RS00205 0.81 -0.6 45,561 + -0.9 45,561 + +0.2 45,570 + -1.4 45,570 + -0.1 45,571 - -2.3 45,621 + -2.2 45,705 + RS_RS00210 0.11 +0.9 45,706 - RS_RS00210 0.11 -1.3 45,706 - RS_RS00210 0.11 -2.3 45,706 - RS_RS00210 0.11 -0.3 45,828 + RS_RS00210 0.20 -2.2 45,828 + RS_RS00210 0.20 -0.9 45,829 - RS_RS00210 0.20 -1.2 45,829 - RS_RS00210 0.20 -1.4 46,009 + RS_RS00210 0.34 -1.3 46,011 + RS_RS00210 0.34 -1.7 46,012 - RS_RS00210 0.34 -1.0
Or see this region's nucleotide sequence