Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35800

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS35790 and RR42_RS35795 overlap by 1 nucleotidesRR42_RS35795 and RR42_RS35800 are separated by 71 nucleotidesRR42_RS35800 and RR42_RS35805 are separated by 21 nucleotides RR42_RS35790: RR42_RS35790 - chemotaxis protein CheD, at 3,477,393 to 3,478,055 _RS35790 RR42_RS35795: RR42_RS35795 - chemotaxis protein CheR, at 3,478,055 to 3,478,957 _RS35795 RR42_RS35800: RR42_RS35800 - chemotaxis protein CheW, at 3,479,029 to 3,479,523 _RS35800 RR42_RS35805: RR42_RS35805 - chemotaxis protein CheA, at 3,479,545 to 3,481,575 _RS35805 Position (kb) 3479 3480Strain fitness (log2 ratio) -2 -1 0 1at 3478.095 kb on + strandat 3478.096 kb on - strandat 3478.219 kb on + strand, within RR42_RS35795at 3478.432 kb on + strand, within RR42_RS35795at 3478.432 kb on + strand, within RR42_RS35795at 3478.435 kb on - strand, within RR42_RS35795at 3478.435 kb on - strand, within RR42_RS35795at 3478.435 kb on - strand, within RR42_RS35795at 3478.435 kb on - strand, within RR42_RS35795at 3478.539 kb on + strand, within RR42_RS35795at 3478.539 kb on + strand, within RR42_RS35795at 3478.726 kb on - strand, within RR42_RS35795at 3478.726 kb on - strand, within RR42_RS35795at 3478.780 kb on - strand, within RR42_RS35795at 3479.248 kb on - strand, within RR42_RS35800at 3479.438 kb on + strand, within RR42_RS35800at 3479.439 kb on - strand, within RR42_RS35800at 3479.452 kb on + strand, within RR42_RS35800at 3479.453 kb on - strand, within RR42_RS35800at 3479.667 kb on - strandat 3480.254 kb on - strand, within RR42_RS35805at 3480.254 kb on - strand, within RR42_RS35805at 3480.516 kb on - strand, within RR42_RS35805at 3480.516 kb on - strand, within RR42_RS35805

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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3,478,095 + +1.1
3,478,096 - +0.8
3,478,219 + RR42_RS35795 0.18 +0.2
3,478,432 + RR42_RS35795 0.42 -0.8
3,478,432 + RR42_RS35795 0.42 +0.2
3,478,435 - RR42_RS35795 0.42 +0.1
3,478,435 - RR42_RS35795 0.42 +0.7
3,478,435 - RR42_RS35795 0.42 +0.9
3,478,435 - RR42_RS35795 0.42 +1.5
3,478,539 + RR42_RS35795 0.54 +0.5
3,478,539 + RR42_RS35795 0.54 +0.0
3,478,726 - RR42_RS35795 0.74 +0.3
3,478,726 - RR42_RS35795 0.74 -0.1
3,478,780 - RR42_RS35795 0.80 +0.9
3,479,248 - RR42_RS35800 0.44 -1.2
3,479,438 + RR42_RS35800 0.83 +1.1
3,479,439 - RR42_RS35800 0.83 -0.2
3,479,452 + RR42_RS35800 0.85 -2.5
3,479,453 - RR42_RS35800 0.86 +0.9
3,479,667 - +0.7
3,480,254 - RR42_RS35805 0.35 -1.0
3,480,254 - RR42_RS35805 0.35 +0.5
3,480,516 - RR42_RS35805 0.48 +0.7
3,480,516 - RR42_RS35805 0.48 +1.3

Or see this region's nucleotide sequence