Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31910

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS31905 and RR42_RS31910 are separated by 11 nucleotidesRR42_RS31910 and RR42_RS31915 are separated by 14 nucleotidesRR42_RS31915 and RR42_RS31920 are separated by 50 nucleotides RR42_RS31905: RR42_RS31905 - acyl-CoA dehydrogenase, at 2,535,045 to 2,536,271 _RS31905 RR42_RS31910: RR42_RS31910 - acyl-CoA dehydrogenase, at 2,536,283 to 2,537,527 _RS31910 RR42_RS31915: RR42_RS31915 - short-chain dehydrogenase, at 2,537,542 to 2,538,417 _RS31915 RR42_RS31920: RR42_RS31920 - acetyl-CoA acetyltransferase, at 2,538,468 to 2,539,619 _RS31920 Position (kb) 2536 2537 2538Strain fitness (log2 ratio) -1 0 1 2at 2535.367 kb on + strand, within RR42_RS31905at 2535.368 kb on - strand, within RR42_RS31905at 2535.981 kb on - strand, within RR42_RS31905at 2536.284 kb on + strandat 2536.411 kb on - strand, within RR42_RS31910at 2536.420 kb on + strand, within RR42_RS31910at 2536.712 kb on - strand, within RR42_RS31910at 2537.553 kb on - strandat 2537.553 kb on - strandat 2537.771 kb on + strand, within RR42_RS31915at 2537.771 kb on + strand, within RR42_RS31915at 2537.772 kb on - strand, within RR42_RS31915at 2537.774 kb on + strand, within RR42_RS31915at 2537.936 kb on + strand, within RR42_RS31915at 2537.936 kb on + strand, within RR42_RS31915

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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2,535,367 + RR42_RS31905 0.26 +0.7
2,535,368 - RR42_RS31905 0.26 -1.2
2,535,981 - RR42_RS31905 0.76 -1.3
2,536,284 + +1.9
2,536,411 - RR42_RS31910 0.10 -0.3
2,536,420 + RR42_RS31910 0.11 -1.3
2,536,712 - RR42_RS31910 0.34 -1.6
2,537,553 - +1.0
2,537,553 - -0.2
2,537,771 + RR42_RS31915 0.26 +0.5
2,537,771 + RR42_RS31915 0.26 -0.0
2,537,772 - RR42_RS31915 0.26 -1.6
2,537,774 + RR42_RS31915 0.26 -0.4
2,537,936 + RR42_RS31915 0.45 +0.8
2,537,936 + RR42_RS31915 0.45 +0.0

Or see this region's nucleotide sequence