Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29340

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS29335 and RR42_RS29340 are separated by 308 nucleotidesRR42_RS29340 and RR42_RS29345 are separated by 208 nucleotidesRR42_RS29345 and RR42_RS29350 are separated by 79 nucleotides RR42_RS29335: RR42_RS29335 - integrase, at 1,935,039 to 1,935,983 _RS29335 RR42_RS29340: RR42_RS29340 - hypothetical protein, at 1,936,292 to 1,937,260 _RS29340 RR42_RS29345: RR42_RS29345 - ArsR family transcriptional regulator, at 1,937,469 to 1,937,834 _RS29345 RR42_RS29350: RR42_RS29350 - glycerol uptake facilitator or water-selective channels, at 1,937,914 to 1,938,639 _RS29350 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -2 -1 0 1 2at 1935.780 kb on - strand, within RR42_RS29335at 1935.873 kb on + strand, within RR42_RS29335at 1935.873 kb on + strand, within RR42_RS29335at 1936.147 kb on - strandat 1936.147 kb on - strandat 1936.394 kb on - strand, within RR42_RS29340at 1936.550 kb on + strand, within RR42_RS29340at 1936.550 kb on + strand, within RR42_RS29340at 1936.551 kb on - strand, within RR42_RS29340at 1936.551 kb on - strand, within RR42_RS29340at 1936.551 kb on - strand, within RR42_RS29340at 1936.601 kb on + strand, within RR42_RS29340at 1936.602 kb on - strand, within RR42_RS29340at 1936.602 kb on - strand, within RR42_RS29340at 1936.602 kb on - strand, within RR42_RS29340at 1937.182 kb on + strandat 1937.259 kb on - strandat 1937.259 kb on - strandat 1937.259 kb on - strandat 1937.259 kb on - strandat 1937.259 kb on - strandat 1937.259 kb on - strandat 1937.259 kb on - strandat 1937.293 kb on + strandat 1937.293 kb on + strandat 1937.294 kb on - strandat 1937.294 kb on - strandat 1937.294 kb on - strandat 1937.407 kb on + strandat 1937.436 kb on + strandat 1937.436 kb on + strandat 1937.436 kb on + strandat 1937.437 kb on - strandat 1937.437 kb on - strandat 1937.685 kb on + strand, within RR42_RS29345at 1937.686 kb on - strand, within RR42_RS29345at 1937.686 kb on - strand, within RR42_RS29345at 1937.686 kb on - strand, within RR42_RS29345at 1937.719 kb on + strand, within RR42_RS29345at 1937.719 kb on + strand, within RR42_RS29345at 1937.719 kb on + strand, within RR42_RS29345at 1937.720 kb on - strand, within RR42_RS29345at 1938.012 kb on + strand, within RR42_RS29350at 1938.097 kb on - strand, within RR42_RS29350at 1938.097 kb on - strand, within RR42_RS29350at 1938.132 kb on + strand, within RR42_RS29350at 1938.162 kb on - strand, within RR42_RS29350at 1938.162 kb on - strand, within RR42_RS29350at 1938.162 kb on - strand, within RR42_RS29350at 1938.172 kb on + strand, within RR42_RS29350at 1938.176 kb on + strand, within RR42_RS29350at 1938.176 kb on + strand, within RR42_RS29350at 1938.176 kb on + strand, within RR42_RS29350at 1938.177 kb on + strand, within RR42_RS29350at 1938.177 kb on - strand, within RR42_RS29350at 1938.177 kb on - strand, within RR42_RS29350at 1938.177 kb on - strand, within RR42_RS29350at 1938.229 kb on + strand, within RR42_RS29350

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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1,935,780 - RR42_RS29335 0.78 +2.1
1,935,873 + RR42_RS29335 0.88 -1.2
1,935,873 + RR42_RS29335 0.88 -0.6
1,936,147 - +0.8
1,936,147 - +1.6
1,936,394 - RR42_RS29340 0.11 +1.0
1,936,550 + RR42_RS29340 0.27 +0.3
1,936,550 + RR42_RS29340 0.27 +2.0
1,936,551 - RR42_RS29340 0.27 +2.1
1,936,551 - RR42_RS29340 0.27 +1.1
1,936,551 - RR42_RS29340 0.27 +0.2
1,936,601 + RR42_RS29340 0.32 +2.0
1,936,602 - RR42_RS29340 0.32 +1.0
1,936,602 - RR42_RS29340 0.32 +0.4
1,936,602 - RR42_RS29340 0.32 +0.1
1,937,182 + +0.7
1,937,259 - -1.0
1,937,259 - -0.5
1,937,259 - +1.1
1,937,259 - -1.9
1,937,259 - -1.0
1,937,259 - -0.3
1,937,259 - -0.2
1,937,293 + -2.6
1,937,293 + +0.0
1,937,294 - -0.5
1,937,294 - -0.7
1,937,294 - +0.5
1,937,407 + +1.6
1,937,436 + -0.8
1,937,436 + -0.1
1,937,436 + -0.2
1,937,437 - +1.2
1,937,437 - -0.3
1,937,685 + RR42_RS29345 0.59 -0.1
1,937,686 - RR42_RS29345 0.59 -0.3
1,937,686 - RR42_RS29345 0.59 +0.3
1,937,686 - RR42_RS29345 0.59 -0.0
1,937,719 + RR42_RS29345 0.68 -2.5
1,937,719 + RR42_RS29345 0.68 +0.0
1,937,719 + RR42_RS29345 0.68 +0.1
1,937,720 - RR42_RS29345 0.69 +2.0
1,938,012 + RR42_RS29350 0.13 -0.3
1,938,097 - RR42_RS29350 0.25 +0.4
1,938,097 - RR42_RS29350 0.25 +0.9
1,938,132 + RR42_RS29350 0.30 +0.6
1,938,162 - RR42_RS29350 0.34 +0.7
1,938,162 - RR42_RS29350 0.34 -0.6
1,938,162 - RR42_RS29350 0.34 +0.3
1,938,172 + RR42_RS29350 0.36 +0.9
1,938,176 + RR42_RS29350 0.36 +0.9
1,938,176 + RR42_RS29350 0.36 +0.1
1,938,176 + RR42_RS29350 0.36 -0.6
1,938,177 + RR42_RS29350 0.36 +1.1
1,938,177 - RR42_RS29350 0.36 +0.1
1,938,177 - RR42_RS29350 0.36 +1.0
1,938,177 - RR42_RS29350 0.36 +0.3
1,938,229 + RR42_RS29350 0.43 +0.3

Or see this region's nucleotide sequence