Experiment: R2A with Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24905 and RR42_RS24910 are separated by 101 nucleotides RR42_RS24910 and RR42_RS24915 are separated by 344 nucleotides RR42_RS24915 and RR42_RS24920 are separated by 99 nucleotides
RR42_RS24905: RR42_RS24905 - alpha/beta hydrolase, at 925,611 to 926,546
_RS24905
RR42_RS24910: RR42_RS24910 - hypothetical protein, at 926,648 to 927,565
_RS24910
RR42_RS24915: RR42_RS24915 - hypothetical protein, at 927,910 to 928,101
_RS24915
RR42_RS24920: RR42_RS24920 - MFS transporter, at 928,201 to 929,736
_RS24920
Position (kb) 926
927
928 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 925.679 kb on - strand at 925.744 kb on + strand, within RR42_RS24905 at 925.925 kb on - strand, within RR42_RS24905 at 926.000 kb on - strand, within RR42_RS24905 at 926.179 kb on + strand, within RR42_RS24905 at 926.180 kb on - strand, within RR42_RS24905 at 926.248 kb on + strand, within RR42_RS24905 at 926.384 kb on - strand, within RR42_RS24905 at 926.479 kb on + strand at 926.479 kb on + strand at 926.479 kb on + strand at 926.480 kb on - strand at 926.480 kb on - strand at 926.480 kb on - strand at 926.480 kb on - strand at 926.516 kb on - strand at 926.519 kb on + strand at 926.519 kb on + strand at 926.562 kb on + strand at 926.649 kb on + strand at 926.650 kb on - strand at 926.650 kb on - strand at 926.650 kb on - strand at 926.703 kb on + strand at 926.703 kb on + strand at 926.718 kb on + strand at 926.718 kb on + strand at 926.718 kb on + strand at 926.871 kb on + strand, within RR42_RS24910 at 926.871 kb on + strand, within RR42_RS24910 at 926.871 kb on + strand, within RR42_RS24910 at 926.880 kb on + strand, within RR42_RS24910 at 926.955 kb on + strand, within RR42_RS24910 at 927.208 kb on - strand, within RR42_RS24910 at 927.258 kb on + strand, within RR42_RS24910 at 927.259 kb on - strand, within RR42_RS24910 at 927.259 kb on - strand, within RR42_RS24910 at 927.358 kb on - strand, within RR42_RS24910 at 927.471 kb on + strand, within RR42_RS24910 at 927.550 kb on + strand at 927.617 kb on + strand at 927.617 kb on + strand at 927.618 kb on - strand at 927.618 kb on - strand at 927.798 kb on - strand at 927.857 kb on - strand at 927.857 kb on - strand at 927.909 kb on + strand at 927.910 kb on - strand at 927.910 kb on - strand at 927.960 kb on + strand, within RR42_RS24915 at 927.960 kb on + strand, within RR42_RS24915 at 927.961 kb on - strand, within RR42_RS24915 at 928.046 kb on + strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.047 kb on - strand, within RR42_RS24915 at 928.162 kb on + strand at 928.276 kb on + strand at 928.369 kb on + strand, within RR42_RS24920 at 928.369 kb on + strand, within RR42_RS24920 at 928.370 kb on - strand, within RR42_RS24920 at 928.439 kb on - strand, within RR42_RS24920 at 928.537 kb on + strand, within RR42_RS24920
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM remove 925,679 - +0.1 925,744 + RR42_RS24905 0.14 -1.2 925,925 - RR42_RS24905 0.34 +1.0 926,000 - RR42_RS24905 0.42 -0.5 926,179 + RR42_RS24905 0.61 +1.1 926,180 - RR42_RS24905 0.61 +0.5 926,248 + RR42_RS24905 0.68 +0.0 926,384 - RR42_RS24905 0.83 +0.4 926,479 + +0.3 926,479 + +1.2 926,479 + +0.1 926,480 - +1.8 926,480 - -0.8 926,480 - +1.4 926,480 - +0.4 926,516 - -0.7 926,519 + -1.8 926,519 + -0.0 926,562 + -0.6 926,649 + +0.7 926,650 - -2.9 926,650 - -0.3 926,650 - +0.8 926,703 + -0.3 926,703 + +0.5 926,718 + -0.1 926,718 + -0.7 926,718 + -0.2 926,871 + RR42_RS24910 0.24 +0.4 926,871 + RR42_RS24910 0.24 +0.3 926,871 + RR42_RS24910 0.24 -0.2 926,880 + RR42_RS24910 0.25 -0.2 926,955 + RR42_RS24910 0.33 -0.1 927,208 - RR42_RS24910 0.61 +0.7 927,258 + RR42_RS24910 0.66 +1.2 927,259 - RR42_RS24910 0.67 +0.8 927,259 - RR42_RS24910 0.67 -2.1 927,358 - RR42_RS24910 0.77 -0.8 927,471 + RR42_RS24910 0.90 -1.7 927,550 + +0.2 927,617 + +0.1 927,617 + +2.0 927,618 - -0.5 927,618 - +0.4 927,798 - -1.8 927,857 - +2.0 927,857 - +0.3 927,909 + +1.0 927,910 - -0.2 927,910 - +0.1 927,960 + RR42_RS24915 0.26 +1.0 927,960 + RR42_RS24915 0.26 +0.5 927,961 - RR42_RS24915 0.27 -1.2 928,046 + RR42_RS24915 0.71 +0.9 928,047 - RR42_RS24915 0.71 -2.0 928,047 - RR42_RS24915 0.71 -1.2 928,047 - RR42_RS24915 0.71 +0.5 928,047 - RR42_RS24915 0.71 -1.8 928,162 + -0.3 928,276 + -1.7 928,369 + RR42_RS24920 0.11 -0.0 928,369 + RR42_RS24920 0.11 +0.5 928,370 - RR42_RS24920 0.11 -0.2 928,439 - RR42_RS24920 0.15 -0.9 928,537 + RR42_RS24920 0.22 -1.1
Or see this region's nucleotide sequence