Experiment: R2A with Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24805 and RR42_RS24810 are separated by 13 nucleotides RR42_RS24810 and RR42_RS24815 are separated by 59 nucleotides RR42_RS24815 and RR42_RS24820 are separated by 6 nucleotides
RR42_RS24805: RR42_RS24805 - thiolase, at 902,967 to 904,181
_RS24805
RR42_RS24810: RR42_RS24810 - hypothetical protein, at 904,195 to 904,602
_RS24810
RR42_RS24815: RR42_RS24815 - hypothetical protein, at 904,662 to 905,681
_RS24815
RR42_RS24820: RR42_RS24820 - hypothetical protein, at 905,688 to 906,893
_RS24820
Position (kb) 904
905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 903.679 kb on - strand, within RR42_RS24805 at 903.714 kb on + strand, within RR42_RS24805 at 903.715 kb on - strand, within RR42_RS24805 at 903.715 kb on - strand, within RR42_RS24805 at 903.943 kb on - strand, within RR42_RS24805 at 904.285 kb on + strand, within RR42_RS24810 at 904.286 kb on - strand, within RR42_RS24810 at 904.454 kb on - strand, within RR42_RS24810 at 904.487 kb on - strand, within RR42_RS24810 at 904.638 kb on + strand at 904.648 kb on + strand at 904.649 kb on - strand at 904.703 kb on - strand at 905.067 kb on + strand, within RR42_RS24815 at 905.067 kb on + strand, within RR42_RS24815 at 905.067 kb on + strand, within RR42_RS24815 at 905.238 kb on + strand, within RR42_RS24815 at 905.442 kb on + strand, within RR42_RS24815 at 905.667 kb on + strand at 905.705 kb on - strand at 905.705 kb on - strand at 906.062 kb on - strand, within RR42_RS24820 at 906.062 kb on - strand, within RR42_RS24820 at 906.334 kb on - strand, within RR42_RS24820 at 906.402 kb on + strand, within RR42_RS24820
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM remove 903,679 - RR42_RS24805 0.59 -0.7 903,714 + RR42_RS24805 0.61 +1.3 903,715 - RR42_RS24805 0.62 -0.3 903,715 - RR42_RS24805 0.62 +0.5 903,943 - RR42_RS24805 0.80 +0.9 904,285 + RR42_RS24810 0.22 +0.8 904,286 - RR42_RS24810 0.22 +1.0 904,454 - RR42_RS24810 0.63 +1.5 904,487 - RR42_RS24810 0.72 -0.3 904,638 + +0.7 904,648 + -0.9 904,649 - -0.1 904,703 - -1.1 905,067 + RR42_RS24815 0.40 -1.4 905,067 + RR42_RS24815 0.40 -1.5 905,067 + RR42_RS24815 0.40 -0.6 905,238 + RR42_RS24815 0.56 -1.3 905,442 + RR42_RS24815 0.76 +0.3 905,667 + -0.3 905,705 - +0.7 905,705 - -1.1 906,062 - RR42_RS24820 0.31 -0.9 906,062 - RR42_RS24820 0.31 -0.3 906,334 - RR42_RS24820 0.54 +1.0 906,402 + RR42_RS24820 0.59 -3.1
Or see this region's nucleotide sequence