Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23600

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23590 and RR42_RS23595 are separated by 187 nucleotidesRR42_RS23595 and RR42_RS23600 overlap by 4 nucleotidesRR42_RS23600 and RR42_RS23605 overlap by 4 nucleotides RR42_RS23590: RR42_RS23590 - FkbM family methyltransferase, at 617,882 to 618,952 _RS23590 RR42_RS23595: RR42_RS23595 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 619,140 to 619,685 _RS23595 RR42_RS23600: RR42_RS23600 - SAM-dependent methyltransferase, at 619,682 to 620,965 _RS23600 RR42_RS23605: RR42_RS23605 - CDP-glucose 4,6-dehydratase, at 620,962 to 622,020 _RS23605 Position (kb) 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 618.783 kb on + strand, within RR42_RS23590at 618.783 kb on + strand, within RR42_RS23590at 618.783 kb on + strand, within RR42_RS23590at 618.784 kb on - strand, within RR42_RS23590at 618.784 kb on - strand, within RR42_RS23590at 619.120 kb on + strandat 619.291 kb on + strand, within RR42_RS23595at 619.292 kb on - strand, within RR42_RS23595at 619.292 kb on - strand, within RR42_RS23595at 619.351 kb on + strand, within RR42_RS23595at 619.402 kb on + strand, within RR42_RS23595at 619.415 kb on - strand, within RR42_RS23595at 619.798 kb on - strandat 619.896 kb on + strand, within RR42_RS23600at 619.897 kb on - strand, within RR42_RS23600at 619.897 kb on - strand, within RR42_RS23600at 619.927 kb on - strand, within RR42_RS23600at 619.939 kb on + strand, within RR42_RS23600at 619.939 kb on + strand, within RR42_RS23600at 619.940 kb on - strand, within RR42_RS23600at 619.963 kb on - strand, within RR42_RS23600at 620.250 kb on + strand, within RR42_RS23600at 620.250 kb on + strand, within RR42_RS23600at 620.251 kb on - strand, within RR42_RS23600at 620.256 kb on + strand, within RR42_RS23600at 620.568 kb on + strand, within RR42_RS23600at 620.569 kb on - strand, within RR42_RS23600at 620.655 kb on + strand, within RR42_RS23600at 620.688 kb on + strand, within RR42_RS23600at 620.700 kb on + strand, within RR42_RS23600at 620.707 kb on - strand, within RR42_RS23600at 620.754 kb on - strand, within RR42_RS23600at 621.036 kb on - strandat 621.314 kb on + strand, within RR42_RS23605at 621.555 kb on - strand, within RR42_RS23605at 621.555 kb on - strand, within RR42_RS23605at 621.555 kb on - strand, within RR42_RS23605at 621.618 kb on - strand, within RR42_RS23605at 621.911 kb on + strand, within RR42_RS23605at 621.947 kb on - strandat 621.947 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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618,783 + RR42_RS23590 0.84 -0.3
618,783 + RR42_RS23590 0.84 +1.1
618,783 + RR42_RS23590 0.84 -0.2
618,784 - RR42_RS23590 0.84 -0.6
618,784 - RR42_RS23590 0.84 -0.1
619,120 + -1.3
619,291 + RR42_RS23595 0.28 -0.1
619,292 - RR42_RS23595 0.28 +0.4
619,292 - RR42_RS23595 0.28 +0.3
619,351 + RR42_RS23595 0.39 -2.1
619,402 + RR42_RS23595 0.48 -1.1
619,415 - RR42_RS23595 0.50 +0.3
619,798 - +0.3
619,896 + RR42_RS23600 0.17 +0.1
619,897 - RR42_RS23600 0.17 +1.6
619,897 - RR42_RS23600 0.17 -1.1
619,927 - RR42_RS23600 0.19 -0.6
619,939 + RR42_RS23600 0.20 +1.5
619,939 + RR42_RS23600 0.20 -0.8
619,940 - RR42_RS23600 0.20 +0.2
619,963 - RR42_RS23600 0.22 +0.3
620,250 + RR42_RS23600 0.44 +0.4
620,250 + RR42_RS23600 0.44 +0.4
620,251 - RR42_RS23600 0.44 +1.4
620,256 + RR42_RS23600 0.45 -2.8
620,568 + RR42_RS23600 0.69 +1.0
620,569 - RR42_RS23600 0.69 -0.0
620,655 + RR42_RS23600 0.76 -0.4
620,688 + RR42_RS23600 0.78 +0.1
620,700 + RR42_RS23600 0.79 +0.0
620,707 - RR42_RS23600 0.80 +0.3
620,754 - RR42_RS23600 0.83 +0.2
621,036 - -2.6
621,314 + RR42_RS23605 0.33 +1.1
621,555 - RR42_RS23605 0.56 +1.0
621,555 - RR42_RS23605 0.56 -0.7
621,555 - RR42_RS23605 0.56 -0.2
621,618 - RR42_RS23605 0.62 -2.4
621,911 + RR42_RS23605 0.90 -0.0
621,947 - -0.5
621,947 - +2.0

Or see this region's nucleotide sequence