Experiment: R2A with Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23120 and RR42_RS23125 are separated by 32 nucleotides RR42_RS23125 and RR42_RS23130 are separated by 39 nucleotides RR42_RS23130 and RR42_RS23135 are separated by 17 nucleotides
RR42_RS23120: RR42_RS23120 - hypothetical protein, at 521,900 to 522,226
_RS23120
RR42_RS23125: RR42_RS23125 - hypothetical protein, at 522,259 to 522,546
_RS23125
RR42_RS23130: RR42_RS23130 - bleomycin resistance protein, at 522,586 to 522,951
_RS23130
RR42_RS23135: RR42_RS23135 - trans-2-enoyl-CoA reductase, at 522,969 to 524,165
_RS23135
Position (kb) 522
523 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 521.793 kb on - strand at 521.916 kb on + strand at 521.917 kb on - strand at 521.917 kb on - strand at 522.040 kb on + strand, within RR42_RS23120 at 522.040 kb on + strand, within RR42_RS23120 at 522.040 kb on + strand, within RR42_RS23120 at 522.041 kb on - strand, within RR42_RS23120 at 522.130 kb on - strand, within RR42_RS23120 at 522.236 kb on + strand at 522.237 kb on - strand at 522.237 kb on - strand at 522.237 kb on - strand at 522.391 kb on - strand, within RR42_RS23125 at 522.540 kb on - strand at 522.540 kb on - strand at 522.540 kb on - strand at 522.587 kb on + strand at 522.587 kb on + strand at 522.598 kb on + strand at 522.598 kb on + strand at 522.693 kb on - strand, within RR42_RS23130 at 522.825 kb on - strand, within RR42_RS23130 at 522.879 kb on - strand, within RR42_RS23130 at 522.887 kb on + strand, within RR42_RS23130 at 523.073 kb on - strand at 523.100 kb on + strand, within RR42_RS23135 at 523.100 kb on + strand, within RR42_RS23135 at 523.101 kb on - strand, within RR42_RS23135 at 523.101 kb on - strand, within RR42_RS23135 at 523.101 kb on - strand, within RR42_RS23135 at 523.134 kb on + strand, within RR42_RS23135 at 523.135 kb on - strand, within RR42_RS23135 at 523.135 kb on - strand, within RR42_RS23135 at 523.216 kb on + strand, within RR42_RS23135 at 523.217 kb on - strand, within RR42_RS23135 at 523.217 kb on - strand, within RR42_RS23135 at 523.307 kb on - strand, within RR42_RS23135 at 523.307 kb on - strand, within RR42_RS23135 at 523.462 kb on + strand, within RR42_RS23135 at 523.462 kb on + strand, within RR42_RS23135 at 523.462 kb on + strand, within RR42_RS23135 at 523.463 kb on - strand, within RR42_RS23135 at 523.463 kb on - strand, within RR42_RS23135 at 523.463 kb on - strand, within RR42_RS23135 at 523.492 kb on + strand, within RR42_RS23135 at 523.497 kb on - strand, within RR42_RS23135 at 523.724 kb on + strand, within RR42_RS23135 at 523.724 kb on + strand, within RR42_RS23135 at 523.724 kb on + strand, within RR42_RS23135 at 523.855 kb on + strand at 523.900 kb on + strand, within RR42_RS23135 at 523.901 kb on - strand, within RR42_RS23135
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM remove 521,793 - +0.6 521,916 + +0.0 521,917 - +0.9 521,917 - +1.0 522,040 + RR42_RS23120 0.43 -1.5 522,040 + RR42_RS23120 0.43 +0.2 522,040 + RR42_RS23120 0.43 +0.2 522,041 - RR42_RS23120 0.43 -0.2 522,130 - RR42_RS23120 0.70 +0.5 522,236 + +0.1 522,237 - -1.2 522,237 - -1.3 522,237 - -0.4 522,391 - RR42_RS23125 0.46 -0.0 522,540 - -1.2 522,540 - +0.6 522,540 - -0.9 522,587 + -0.4 522,587 + +0.8 522,598 + +0.7 522,598 + +0.5 522,693 - RR42_RS23130 0.29 -2.9 522,825 - RR42_RS23130 0.65 -0.5 522,879 - RR42_RS23130 0.80 -1.9 522,887 + RR42_RS23130 0.82 -0.6 523,073 - -0.2 523,100 + RR42_RS23135 0.11 +0.3 523,100 + RR42_RS23135 0.11 -1.1 523,101 - RR42_RS23135 0.11 +0.2 523,101 - RR42_RS23135 0.11 +0.1 523,101 - RR42_RS23135 0.11 +0.1 523,134 + RR42_RS23135 0.14 -2.8 523,135 - RR42_RS23135 0.14 -0.0 523,135 - RR42_RS23135 0.14 -0.2 523,216 + RR42_RS23135 0.21 +1.0 523,217 - RR42_RS23135 0.21 -0.7 523,217 - RR42_RS23135 0.21 -0.4 523,307 - RR42_RS23135 0.28 +0.2 523,307 - RR42_RS23135 0.28 -2.4 523,462 + RR42_RS23135 0.41 -0.4 523,462 + RR42_RS23135 0.41 +1.2 523,462 + RR42_RS23135 0.41 +1.1 523,463 - RR42_RS23135 0.41 -0.9 523,463 - RR42_RS23135 0.41 -2.2 523,463 - RR42_RS23135 0.41 +1.0 523,492 + RR42_RS23135 0.44 -1.5 523,497 - RR42_RS23135 0.44 -0.2 523,724 + RR42_RS23135 0.63 +1.6 523,724 + RR42_RS23135 0.63 -0.9 523,724 + RR42_RS23135 0.63 -0.6 523,855 + -0.6 523,900 + RR42_RS23135 0.78 -1.3 523,901 - RR42_RS23135 0.78 +0.5
Or see this region's nucleotide sequence