Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19020

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19015 and RR42_RS19020 overlap by 4 nucleotidesRR42_RS19020 and RR42_RS19025 overlap by 4 nucleotidesRR42_RS19025 and RR42_RS19030 are separated by 2 nucleotides RR42_RS19015: RR42_RS19015 - secretin, at 4,118,918 to 4,121,092 _RS19015 RR42_RS19020: RR42_RS19020 - pilus assembly protein PilP, at 4,121,089 to 4,121,622 _RS19020 RR42_RS19025: RR42_RS19025 - pilus assembly protein PilO, at 4,121,619 to 4,122,299 _RS19025 RR42_RS19030: RR42_RS19030 - ferrous iron transporter B, at 4,122,302 to 4,122,946 _RS19030 Position (kb) 4121 4122Strain fitness (log2 ratio) -2 -1 0 1 2at 4120.341 kb on + strand, within RR42_RS19015at 4120.342 kb on - strand, within RR42_RS19015at 4120.350 kb on + strand, within RR42_RS19015at 4120.350 kb on + strand, within RR42_RS19015at 4120.350 kb on + strand, within RR42_RS19015at 4120.350 kb on + strand, within RR42_RS19015at 4120.350 kb on + strand, within RR42_RS19015at 4120.351 kb on - strand, within RR42_RS19015at 4120.351 kb on - strand, within RR42_RS19015at 4120.597 kb on + strand, within RR42_RS19015at 4120.694 kb on - strand, within RR42_RS19015at 4120.694 kb on - strand, within RR42_RS19015at 4120.784 kb on + strand, within RR42_RS19015at 4120.830 kb on + strand, within RR42_RS19015at 4120.830 kb on + strand, within RR42_RS19015at 4121.036 kb on + strandat 4121.205 kb on - strand, within RR42_RS19020at 4121.219 kb on + strand, within RR42_RS19020at 4121.220 kb on - strand, within RR42_RS19020at 4121.250 kb on + strand, within RR42_RS19020at 4121.250 kb on + strand, within RR42_RS19020at 4121.250 kb on + strand, within RR42_RS19020at 4121.251 kb on - strand, within RR42_RS19020at 4121.251 kb on - strand, within RR42_RS19020at 4121.251 kb on - strand, within RR42_RS19020at 4121.251 kb on - strand, within RR42_RS19020at 4121.251 kb on - strand, within RR42_RS19020at 4121.251 kb on - strand, within RR42_RS19020at 4121.251 kb on - strand, within RR42_RS19020at 4121.251 kb on - strand, within RR42_RS19020at 4121.254 kb on + strand, within RR42_RS19020at 4121.255 kb on - strand, within RR42_RS19020at 4121.255 kb on - strand, within RR42_RS19020at 4121.255 kb on - strand, within RR42_RS19020at 4121.255 kb on - strand, within RR42_RS19020at 4121.270 kb on + strand, within RR42_RS19020at 4121.270 kb on + strand, within RR42_RS19020at 4121.270 kb on + strand, within RR42_RS19020at 4121.270 kb on + strand, within RR42_RS19020at 4121.450 kb on + strand, within RR42_RS19020at 4121.450 kb on + strand, within RR42_RS19020at 4121.450 kb on + strand, within RR42_RS19020at 4121.450 kb on + strand, within RR42_RS19020at 4121.451 kb on - strand, within RR42_RS19020at 4121.451 kb on - strand, within RR42_RS19020at 4121.451 kb on - strand, within RR42_RS19020at 4121.451 kb on - strand, within RR42_RS19020at 4121.451 kb on - strand, within RR42_RS19020at 4121.870 kb on - strand, within RR42_RS19025at 4121.972 kb on + strand, within RR42_RS19025at 4121.973 kb on - strand, within RR42_RS19025at 4121.973 kb on - strand, within RR42_RS19025at 4122.073 kb on + strand, within RR42_RS19025at 4122.074 kb on - strand, within RR42_RS19025at 4122.074 kb on - strand, within RR42_RS19025at 4122.074 kb on - strand, within RR42_RS19025at 4122.074 kb on - strand, within RR42_RS19025at 4122.074 kb on - strand, within RR42_RS19025at 4122.074 kb on - strand, within RR42_RS19025at 4122.139 kb on + strand, within RR42_RS19025at 4122.139 kb on + strand, within RR42_RS19025at 4122.140 kb on - strand, within RR42_RS19025at 4122.140 kb on - strand, within RR42_RS19025at 4122.388 kb on - strand, within RR42_RS19030at 4122.500 kb on - strand, within RR42_RS19030at 4122.557 kb on - strand, within RR42_RS19030at 4122.557 kb on - strand, within RR42_RS19030at 4122.591 kb on + strand, within RR42_RS19030at 4122.592 kb on - strand, within RR42_RS19030

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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4,120,341 + RR42_RS19015 0.65 +0.1
4,120,342 - RR42_RS19015 0.65 +1.5
4,120,350 + RR42_RS19015 0.66 +0.2
4,120,350 + RR42_RS19015 0.66 +0.8
4,120,350 + RR42_RS19015 0.66 -1.0
4,120,350 + RR42_RS19015 0.66 +0.5
4,120,350 + RR42_RS19015 0.66 +0.5
4,120,351 - RR42_RS19015 0.66 +0.9
4,120,351 - RR42_RS19015 0.66 -0.4
4,120,597 + RR42_RS19015 0.77 -0.5
4,120,694 - RR42_RS19015 0.82 -0.4
4,120,694 - RR42_RS19015 0.82 +0.5
4,120,784 + RR42_RS19015 0.86 -0.6
4,120,830 + RR42_RS19015 0.88 -0.2
4,120,830 + RR42_RS19015 0.88 -0.3
4,121,036 + +0.3
4,121,205 - RR42_RS19020 0.22 -2.1
4,121,219 + RR42_RS19020 0.24 +0.1
4,121,220 - RR42_RS19020 0.25 -1.2
4,121,250 + RR42_RS19020 0.30 -0.8
4,121,250 + RR42_RS19020 0.30 +0.2
4,121,250 + RR42_RS19020 0.30 +0.6
4,121,251 - RR42_RS19020 0.30 -0.3
4,121,251 - RR42_RS19020 0.30 -0.7
4,121,251 - RR42_RS19020 0.30 +0.2
4,121,251 - RR42_RS19020 0.30 -0.1
4,121,251 - RR42_RS19020 0.30 -0.6
4,121,251 - RR42_RS19020 0.30 -2.4
4,121,251 - RR42_RS19020 0.30 -0.5
4,121,251 - RR42_RS19020 0.30 -0.1
4,121,254 + RR42_RS19020 0.31 -1.1
4,121,255 - RR42_RS19020 0.31 +0.9
4,121,255 - RR42_RS19020 0.31 -2.2
4,121,255 - RR42_RS19020 0.31 -0.1
4,121,255 - RR42_RS19020 0.31 -0.8
4,121,270 + RR42_RS19020 0.34 +0.4
4,121,270 + RR42_RS19020 0.34 -1.5
4,121,270 + RR42_RS19020 0.34 +0.3
4,121,270 + RR42_RS19020 0.34 +1.4
4,121,450 + RR42_RS19020 0.68 -1.2
4,121,450 + RR42_RS19020 0.68 +0.3
4,121,450 + RR42_RS19020 0.68 -2.2
4,121,450 + RR42_RS19020 0.68 -0.6
4,121,451 - RR42_RS19020 0.68 -0.5
4,121,451 - RR42_RS19020 0.68 -1.5
4,121,451 - RR42_RS19020 0.68 +0.8
4,121,451 - RR42_RS19020 0.68 -1.5
4,121,451 - RR42_RS19020 0.68 -0.3
4,121,870 - RR42_RS19025 0.37 +0.7
4,121,972 + RR42_RS19025 0.52 -1.8
4,121,973 - RR42_RS19025 0.52 +0.5
4,121,973 - RR42_RS19025 0.52 +0.6
4,122,073 + RR42_RS19025 0.67 +0.5
4,122,074 - RR42_RS19025 0.67 -0.4
4,122,074 - RR42_RS19025 0.67 -0.8
4,122,074 - RR42_RS19025 0.67 -1.1
4,122,074 - RR42_RS19025 0.67 -0.1
4,122,074 - RR42_RS19025 0.67 -0.4
4,122,074 - RR42_RS19025 0.67 -0.9
4,122,139 + RR42_RS19025 0.76 +2.4
4,122,139 + RR42_RS19025 0.76 -1.1
4,122,140 - RR42_RS19025 0.77 -0.5
4,122,140 - RR42_RS19025 0.77 -0.7
4,122,388 - RR42_RS19030 0.13 +0.2
4,122,500 - RR42_RS19030 0.31 -0.9
4,122,557 - RR42_RS19030 0.40 +0.7
4,122,557 - RR42_RS19030 0.40 -0.6
4,122,591 + RR42_RS19030 0.45 +0.8
4,122,592 - RR42_RS19030 0.45 -2.6

Or see this region's nucleotide sequence