Experiment: R2A with Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18940 and RR42_RS18945 are separated by 247 nucleotides RR42_RS18945 and RR42_RS18950 are separated by 124 nucleotides RR42_RS18950 and RR42_RS18955 are separated by 203 nucleotides
RR42_RS18940: RR42_RS18940 - ABC transporter ATP-binding protein, at 4,100,577 to 4,101,530
_RS18940
RR42_RS18945: RR42_RS18945 - toluene tolerance protein, at 4,101,778 to 4,102,086
_RS18945
RR42_RS18950: RR42_RS18950 - hypothetical protein, at 4,102,211 to 4,102,834
_RS18950
RR42_RS18955: RR42_RS18955 - ABC transporter, at 4,103,038 to 4,103,868
_RS18955
Position (kb) 4102
4103 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4101.224 kb on - strand, within RR42_RS18940 at 4101.224 kb on - strand, within RR42_RS18940 at 4101.303 kb on - strand, within RR42_RS18940 at 4101.303 kb on - strand, within RR42_RS18940 at 4101.303 kb on - strand, within RR42_RS18940 at 4101.640 kb on - strand at 4101.640 kb on - strand at 4101.640 kb on - strand at 4101.640 kb on - strand at 4101.640 kb on - strand at 4101.640 kb on - strand at 4101.640 kb on - strand at 4101.640 kb on - strand at 4101.642 kb on - strand at 4101.671 kb on - strand at 4101.671 kb on - strand at 4101.671 kb on - strand at 4101.671 kb on - strand at 4101.857 kb on + strand, within RR42_RS18945 at 4101.857 kb on + strand, within RR42_RS18945 at 4101.857 kb on + strand, within RR42_RS18945 at 4101.857 kb on + strand, within RR42_RS18945 at 4101.857 kb on + strand, within RR42_RS18945 at 4101.858 kb on - strand, within RR42_RS18945 at 4102.152 kb on + strand at 4102.152 kb on + strand at 4102.152 kb on + strand at 4102.153 kb on - strand at 4102.153 kb on - strand at 4102.311 kb on + strand, within RR42_RS18950 at 4102.311 kb on + strand, within RR42_RS18950 at 4102.311 kb on + strand, within RR42_RS18950 at 4102.312 kb on - strand, within RR42_RS18950 at 4102.312 kb on - strand, within RR42_RS18950 at 4102.312 kb on - strand, within RR42_RS18950 at 4102.312 kb on - strand, within RR42_RS18950 at 4102.350 kb on + strand, within RR42_RS18950 at 4102.351 kb on - strand, within RR42_RS18950 at 4102.351 kb on - strand, within RR42_RS18950 at 4102.351 kb on - strand, within RR42_RS18950 at 4102.351 kb on - strand, within RR42_RS18950 at 4102.464 kb on + strand, within RR42_RS18950 at 4102.515 kb on + strand, within RR42_RS18950 at 4102.515 kb on + strand, within RR42_RS18950 at 4102.515 kb on + strand, within RR42_RS18950 at 4102.515 kb on + strand, within RR42_RS18950 at 4102.515 kb on + strand, within RR42_RS18950 at 4102.515 kb on + strand, within RR42_RS18950 at 4102.516 kb on - strand, within RR42_RS18950 at 4102.516 kb on - strand, within RR42_RS18950 at 4102.805 kb on - strand at 4102.834 kb on + strand at 4102.835 kb on - strand at 4102.835 kb on - strand at 4102.835 kb on - strand at 4102.835 kb on - strand at 4102.845 kb on + strand at 4102.846 kb on - strand at 4102.875 kb on + strand at 4102.876 kb on - strand at 4102.876 kb on - strand at 4102.876 kb on - strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.886 kb on + strand at 4102.887 kb on - strand at 4102.887 kb on - strand at 4102.887 kb on - strand at 4102.887 kb on - strand at 4102.887 kb on - strand at 4102.887 kb on - strand at 4103.061 kb on + strand at 4103.062 kb on - strand at 4103.171 kb on + strand, within RR42_RS18955 at 4103.171 kb on + strand, within RR42_RS18955 at 4103.171 kb on + strand, within RR42_RS18955 at 4103.171 kb on + strand, within RR42_RS18955 at 4103.171 kb on + strand, within RR42_RS18955 at 4103.171 kb on + strand, within RR42_RS18955 at 4103.171 kb on + strand, within RR42_RS18955 at 4103.171 kb on + strand, within RR42_RS18955 at 4103.171 kb on + strand, within RR42_RS18955 at 4103.172 kb on - strand, within RR42_RS18955 at 4103.172 kb on - strand, within RR42_RS18955 at 4103.172 kb on - strand, within RR42_RS18955 at 4103.172 kb on - strand, within RR42_RS18955 at 4103.173 kb on + strand, within RR42_RS18955 at 4103.199 kb on - strand, within RR42_RS18955 at 4103.219 kb on + strand, within RR42_RS18955 at 4103.219 kb on + strand, within RR42_RS18955 at 4103.219 kb on + strand, within RR42_RS18955 at 4103.219 kb on + strand, within RR42_RS18955 at 4103.220 kb on - strand, within RR42_RS18955 at 4103.220 kb on - strand, within RR42_RS18955 at 4103.220 kb on - strand, within RR42_RS18955 at 4103.328 kb on + strand, within RR42_RS18955 at 4103.328 kb on + strand, within RR42_RS18955 at 4103.328 kb on + strand, within RR42_RS18955 at 4103.329 kb on - strand, within RR42_RS18955 at 4103.330 kb on + strand, within RR42_RS18955 at 4103.330 kb on + strand, within RR42_RS18955 at 4103.330 kb on + strand, within RR42_RS18955 at 4103.331 kb on - strand, within RR42_RS18955 at 4103.373 kb on + strand, within RR42_RS18955 at 4103.414 kb on + strand, within RR42_RS18955 at 4103.415 kb on - strand, within RR42_RS18955 at 4103.437 kb on + strand, within RR42_RS18955 at 4103.437 kb on + strand, within RR42_RS18955 at 4103.438 kb on - strand, within RR42_RS18955 at 4103.468 kb on + strand, within RR42_RS18955 at 4103.468 kb on + strand, within RR42_RS18955 at 4103.660 kb on + strand, within RR42_RS18955 at 4103.660 kb on + strand, within RR42_RS18955 at 4103.660 kb on + strand, within RR42_RS18955 at 4103.661 kb on - strand, within RR42_RS18955 at 4103.669 kb on + strand, within RR42_RS18955 at 4103.669 kb on + strand, within RR42_RS18955 at 4103.670 kb on - strand, within RR42_RS18955 at 4103.670 kb on - strand, within RR42_RS18955 at 4103.748 kb on + strand, within RR42_RS18955 at 4103.748 kb on + strand, within RR42_RS18955
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM remove 4,101,224 - RR42_RS18940 0.68 +1.2 4,101,224 - RR42_RS18940 0.68 +1.8 4,101,303 - RR42_RS18940 0.76 -1.5 4,101,303 - RR42_RS18940 0.76 +1.9 4,101,303 - RR42_RS18940 0.76 -0.1 4,101,640 - -1.2 4,101,640 - +0.1 4,101,640 - +0.7 4,101,640 - +1.4 4,101,640 - -0.2 4,101,640 - -0.7 4,101,640 - -0.5 4,101,640 - +0.2 4,101,642 - -0.2 4,101,671 - +0.4 4,101,671 - +0.4 4,101,671 - +1.0 4,101,671 - -0.7 4,101,857 + RR42_RS18945 0.26 +0.0 4,101,857 + RR42_RS18945 0.26 +0.4 4,101,857 + RR42_RS18945 0.26 +0.9 4,101,857 + RR42_RS18945 0.26 +2.0 4,101,857 + RR42_RS18945 0.26 +0.5 4,101,858 - RR42_RS18945 0.26 -2.0 4,102,152 + +0.0 4,102,152 + +0.7 4,102,152 + -1.3 4,102,153 - +1.4 4,102,153 - -1.7 4,102,311 + RR42_RS18950 0.16 -0.1 4,102,311 + RR42_RS18950 0.16 +0.6 4,102,311 + RR42_RS18950 0.16 +1.1 4,102,312 - RR42_RS18950 0.16 +1.2 4,102,312 - RR42_RS18950 0.16 -2.5 4,102,312 - RR42_RS18950 0.16 +0.9 4,102,312 - RR42_RS18950 0.16 +1.4 4,102,350 + RR42_RS18950 0.22 +3.3 4,102,351 - RR42_RS18950 0.22 +1.9 4,102,351 - RR42_RS18950 0.22 +1.6 4,102,351 - RR42_RS18950 0.22 +1.8 4,102,351 - RR42_RS18950 0.22 +0.7 4,102,464 + RR42_RS18950 0.41 +1.0 4,102,515 + RR42_RS18950 0.49 +0.6 4,102,515 + RR42_RS18950 0.49 +0.7 4,102,515 + RR42_RS18950 0.49 +0.6 4,102,515 + RR42_RS18950 0.49 +0.4 4,102,515 + RR42_RS18950 0.49 +1.2 4,102,515 + RR42_RS18950 0.49 +0.6 4,102,516 - RR42_RS18950 0.49 +1.8 4,102,516 - RR42_RS18950 0.49 +0.9 4,102,805 - +1.3 4,102,834 + +0.8 4,102,835 - +0.9 4,102,835 - -0.9 4,102,835 - +0.7 4,102,835 - +0.5 4,102,845 + +1.9 4,102,846 - -1.5 4,102,875 + +0.7 4,102,876 - -0.1 4,102,876 - -0.9 4,102,876 - +0.1 4,102,886 + +2.1 4,102,886 + +0.0 4,102,886 + +1.0 4,102,886 + +1.9 4,102,886 + +0.3 4,102,886 + +1.4 4,102,886 + +1.1 4,102,886 + -0.3 4,102,886 + +1.7 4,102,886 + +0.0 4,102,886 + +0.3 4,102,886 + +1.7 4,102,886 + +0.6 4,102,887 - +0.4 4,102,887 - -0.3 4,102,887 - -1.1 4,102,887 - -1.2 4,102,887 - +0.7 4,102,887 - -0.2 4,103,061 + -1.5 4,103,062 - +0.6 4,103,171 + RR42_RS18955 0.16 -0.8 4,103,171 + RR42_RS18955 0.16 -0.1 4,103,171 + RR42_RS18955 0.16 -0.3 4,103,171 + RR42_RS18955 0.16 -1.1 4,103,171 + RR42_RS18955 0.16 +0.5 4,103,171 + RR42_RS18955 0.16 +1.0 4,103,171 + RR42_RS18955 0.16 +0.7 4,103,171 + RR42_RS18955 0.16 -1.8 4,103,171 + RR42_RS18955 0.16 +1.6 4,103,172 - RR42_RS18955 0.16 +0.5 4,103,172 - RR42_RS18955 0.16 +0.4 4,103,172 - RR42_RS18955 0.16 -2.2 4,103,172 - RR42_RS18955 0.16 +0.2 4,103,173 + RR42_RS18955 0.16 -0.1 4,103,199 - RR42_RS18955 0.19 +1.0 4,103,219 + RR42_RS18955 0.22 +0.4 4,103,219 + RR42_RS18955 0.22 +1.5 4,103,219 + RR42_RS18955 0.22 -0.0 4,103,219 + RR42_RS18955 0.22 +0.1 4,103,220 - RR42_RS18955 0.22 +0.6 4,103,220 - RR42_RS18955 0.22 +1.4 4,103,220 - RR42_RS18955 0.22 +1.1 4,103,328 + RR42_RS18955 0.35 +0.3 4,103,328 + RR42_RS18955 0.35 +0.1 4,103,328 + RR42_RS18955 0.35 -1.1 4,103,329 - RR42_RS18955 0.35 +1.1 4,103,330 + RR42_RS18955 0.35 +0.1 4,103,330 + RR42_RS18955 0.35 -0.2 4,103,330 + RR42_RS18955 0.35 -0.8 4,103,331 - RR42_RS18955 0.35 +0.8 4,103,373 + RR42_RS18955 0.40 +0.5 4,103,414 + RR42_RS18955 0.45 +0.1 4,103,415 - RR42_RS18955 0.45 -1.6 4,103,437 + RR42_RS18955 0.48 +0.2 4,103,437 + RR42_RS18955 0.48 -2.1 4,103,438 - RR42_RS18955 0.48 +0.4 4,103,468 + RR42_RS18955 0.52 +0.4 4,103,468 + RR42_RS18955 0.52 -1.1 4,103,660 + RR42_RS18955 0.75 -1.4 4,103,660 + RR42_RS18955 0.75 -1.5 4,103,660 + RR42_RS18955 0.75 -0.1 4,103,661 - RR42_RS18955 0.75 -0.5 4,103,669 + RR42_RS18955 0.76 +0.5 4,103,669 + RR42_RS18955 0.76 +0.4 4,103,670 - RR42_RS18955 0.76 +0.3 4,103,670 - RR42_RS18955 0.76 -0.2 4,103,748 + RR42_RS18955 0.85 -0.1 4,103,748 + RR42_RS18955 0.85 -0.1
Or see this region's nucleotide sequence