Experiment: R2A with Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17710 and RR42_RS17715 are separated by 71 nucleotides RR42_RS17715 and RR42_RS17720 are separated by 115 nucleotides
RR42_RS17710: RR42_RS17710 - hypothetical protein, at 3,831,118 to 3,832,671
_RS17710
RR42_RS17715: RR42_RS17715 - thiol peroxidase, at 3,832,743 to 3,833,243
_RS17715
RR42_RS17720: RR42_RS17720 - sugar kinase, at 3,833,359 to 3,834,306
_RS17720
Position (kb)
3832
3833
3834 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3831.779 kb on + strand, within RR42_RS17710 at 3831.780 kb on - strand, within RR42_RS17710 at 3831.875 kb on + strand, within RR42_RS17710 at 3832.031 kb on - strand, within RR42_RS17710 at 3832.031 kb on - strand, within RR42_RS17710 at 3832.258 kb on + strand, within RR42_RS17710 at 3832.258 kb on + strand, within RR42_RS17710 at 3832.258 kb on + strand, within RR42_RS17710 at 3832.258 kb on + strand, within RR42_RS17710 at 3832.259 kb on - strand, within RR42_RS17710 at 3832.259 kb on - strand, within RR42_RS17710 at 3832.259 kb on - strand, within RR42_RS17710 at 3832.259 kb on - strand, within RR42_RS17710 at 3832.259 kb on - strand, within RR42_RS17710 at 3832.259 kb on - strand, within RR42_RS17710 at 3832.421 kb on - strand, within RR42_RS17710 at 3832.443 kb on + strand, within RR42_RS17710 at 3832.543 kb on + strand at 3832.544 kb on - strand at 3832.663 kb on + strand at 3832.663 kb on + strand at 3832.664 kb on - strand at 3832.742 kb on + strand at 3832.742 kb on + strand at 3832.742 kb on + strand at 3832.742 kb on + strand at 3832.742 kb on + strand at 3832.742 kb on + strand at 3832.742 kb on + strand at 3832.742 kb on + strand at 3832.743 kb on - strand at 3832.743 kb on - strand at 3832.892 kb on + strand, within RR42_RS17715 at 3833.091 kb on + strand, within RR42_RS17715 at 3833.091 kb on + strand, within RR42_RS17715 at 3833.092 kb on - strand, within RR42_RS17715 at 3833.175 kb on + strand, within RR42_RS17715 at 3833.175 kb on + strand, within RR42_RS17715 at 3833.214 kb on + strand at 3833.214 kb on + strand at 3833.215 kb on - strand at 3833.242 kb on - strand at 3833.340 kb on + strand at 3833.340 kb on + strand at 3833.341 kb on - strand at 3833.929 kb on + strand, within RR42_RS17720 at 3833.930 kb on - strand, within RR42_RS17720 at 3834.071 kb on - strand, within RR42_RS17720 at 3834.243 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM remove 3,831,779 + RR42_RS17710 0.43 -1.2 3,831,780 - RR42_RS17710 0.43 -0.5 3,831,875 + RR42_RS17710 0.49 +0.6 3,832,031 - RR42_RS17710 0.59 -1.5 3,832,031 - RR42_RS17710 0.59 -1.9 3,832,258 + RR42_RS17710 0.73 +0.5 3,832,258 + RR42_RS17710 0.73 +0.1 3,832,258 + RR42_RS17710 0.73 -1.2 3,832,258 + RR42_RS17710 0.73 -0.1 3,832,259 - RR42_RS17710 0.73 -0.3 3,832,259 - RR42_RS17710 0.73 +0.4 3,832,259 - RR42_RS17710 0.73 -0.0 3,832,259 - RR42_RS17710 0.73 -1.0 3,832,259 - RR42_RS17710 0.73 -0.0 3,832,259 - RR42_RS17710 0.73 +0.6 3,832,421 - RR42_RS17710 0.84 -0.9 3,832,443 + RR42_RS17710 0.85 -1.1 3,832,543 + -1.9 3,832,544 - -0.1 3,832,663 + +0.1 3,832,663 + +0.3 3,832,664 - -1.8 3,832,742 + +0.2 3,832,742 + -1.1 3,832,742 + -0.5 3,832,742 + +0.2 3,832,742 + +1.3 3,832,742 + -0.7 3,832,742 + +1.0 3,832,742 + +1.5 3,832,743 - -2.0 3,832,743 - -1.0 3,832,892 + RR42_RS17715 0.30 +2.3 3,833,091 + RR42_RS17715 0.69 +0.8 3,833,091 + RR42_RS17715 0.69 -1.6 3,833,092 - RR42_RS17715 0.70 +2.2 3,833,175 + RR42_RS17715 0.86 +1.3 3,833,175 + RR42_RS17715 0.86 +0.1 3,833,214 + -0.2 3,833,214 + +0.6 3,833,215 - +0.1 3,833,242 - +0.3 3,833,340 + -0.0 3,833,340 + +0.5 3,833,341 - -1.3 3,833,929 + RR42_RS17720 0.60 -1.3 3,833,930 - RR42_RS17720 0.60 -0.7 3,834,071 - RR42_RS17720 0.75 -1.0 3,834,243 + -0.7
Or see this region's nucleotide sequence