Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14880

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14880 and RR42_RS14885 are separated by 93 nucleotidesRR42_RS14885 and RR42_RS14890 are separated by 0 nucleotides RR42_RS14880: RR42_RS14880 - hypothetical protein, at 3,219,005 to 3,219,994 _RS14880 RR42_RS14885: RR42_RS14885 - DNA-directed RNA polymerase sigma-70 factor, at 3,220,088 to 3,220,612 _RS14885 RR42_RS14890: RR42_RS14890 - hypothetical protein, at 3,220,613 to 3,221,329 _RS14890 Position (kb) 3219 3220Strain fitness (log2 ratio) -2 -1 0 1at 3218.173 kb on + strandat 3218.213 kb on - strandat 3218.355 kb on - strandat 3218.811 kb on + strandat 3219.219 kb on + strand, within RR42_RS14880at 3219.539 kb on - strand, within RR42_RS14880at 3219.539 kb on - strand, within RR42_RS14880at 3219.539 kb on - strand, within RR42_RS14880at 3219.980 kb on + strandat 3220.002 kb on - strandat 3220.046 kb on + strandat 3220.046 kb on + strandat 3220.047 kb on - strandat 3220.119 kb on + strandat 3220.120 kb on - strandat 3220.120 kb on - strandat 3220.365 kb on + strand, within RR42_RS14885at 3220.484 kb on - strand, within RR42_RS14885at 3220.554 kb on + strand, within RR42_RS14885at 3220.615 kb on - strandat 3220.845 kb on + strand, within RR42_RS14890at 3220.846 kb on - strand, within RR42_RS14890at 3220.861 kb on - strand, within RR42_RS14890at 3220.930 kb on - strand, within RR42_RS14890

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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3,218,173 + -1.6
3,218,213 - -2.1
3,218,355 - +1.2
3,218,811 + +0.4
3,219,219 + RR42_RS14880 0.22 -0.3
3,219,539 - RR42_RS14880 0.54 -0.8
3,219,539 - RR42_RS14880 0.54 +0.6
3,219,539 - RR42_RS14880 0.54 -1.1
3,219,980 + -1.1
3,220,002 - +1.6
3,220,046 + -0.2
3,220,046 + +0.0
3,220,047 - -0.2
3,220,119 + -1.8
3,220,120 - -0.2
3,220,120 - +0.2
3,220,365 + RR42_RS14885 0.53 +1.3
3,220,484 - RR42_RS14885 0.75 +1.2
3,220,554 + RR42_RS14885 0.89 +0.4
3,220,615 - +1.4
3,220,845 + RR42_RS14890 0.32 +0.8
3,220,846 - RR42_RS14890 0.32 -1.8
3,220,861 - RR42_RS14890 0.35 +1.1
3,220,930 - RR42_RS14890 0.44 +1.6

Or see this region's nucleotide sequence