Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14775

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14765 and RR42_RS14770 are separated by 67 nucleotidesRR42_RS14770 and RR42_RS14775 are separated by 195 nucleotidesRR42_RS14775 and RR42_RS14780 overlap by 4 nucleotides RR42_RS14765: RR42_RS14765 - transporter, at 3,181,729 to 3,182,610 _RS14765 RR42_RS14770: RR42_RS14770 - oligoribonuclease, at 3,182,678 to 3,183,328 _RS14770 RR42_RS14775: RR42_RS14775 - peptidase M48, at 3,183,524 to 3,184,771 _RS14775 RR42_RS14780: RR42_RS14780 - GTPase RsgA, at 3,184,768 to 3,185,796 _RS14780 Position (kb) 3183 3184 3185Strain fitness (log2 ratio) -2 -1 0 1 2at 3182.547 kb on - strandat 3182.625 kb on + strandat 3183.413 kb on - strandat 3183.413 kb on - strandat 3183.413 kb on - strandat 3183.652 kb on + strand, within RR42_RS14775at 3183.652 kb on + strand, within RR42_RS14775at 3183.652 kb on + strand, within RR42_RS14775at 3183.652 kb on + strand, within RR42_RS14775at 3183.683 kb on + strand, within RR42_RS14775at 3183.818 kb on + strand, within RR42_RS14775at 3183.818 kb on + strand, within RR42_RS14775at 3183.884 kb on + strand, within RR42_RS14775at 3183.941 kb on + strand, within RR42_RS14775at 3184.027 kb on + strand, within RR42_RS14775at 3184.027 kb on + strand, within RR42_RS14775at 3184.027 kb on + strand, within RR42_RS14775at 3184.460 kb on + strand, within RR42_RS14775at 3184.542 kb on + strand, within RR42_RS14775at 3184.664 kb on + strandat 3184.664 kb on + strandat 3184.681 kb on + strandat 3184.715 kb on + strandat 3184.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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3,182,547 - -0.6
3,182,625 + -0.6
3,183,413 - -0.4
3,183,413 - -1.5
3,183,413 - +1.6
3,183,652 + RR42_RS14775 0.10 +2.3
3,183,652 + RR42_RS14775 0.10 +2.1
3,183,652 + RR42_RS14775 0.10 +1.6
3,183,652 + RR42_RS14775 0.10 +1.1
3,183,683 + RR42_RS14775 0.13 +1.5
3,183,818 + RR42_RS14775 0.24 +1.4
3,183,818 + RR42_RS14775 0.24 +1.2
3,183,884 + RR42_RS14775 0.29 +1.9
3,183,941 + RR42_RS14775 0.33 +1.1
3,184,027 + RR42_RS14775 0.40 +0.9
3,184,027 + RR42_RS14775 0.40 +1.3
3,184,027 + RR42_RS14775 0.40 +1.9
3,184,460 + RR42_RS14775 0.75 -2.1
3,184,542 + RR42_RS14775 0.82 +1.3
3,184,664 + +1.3
3,184,664 + -1.4
3,184,681 + +0.2
3,184,715 + +1.8
3,184,715 + -0.2

Or see this region's nucleotide sequence