Experiment: R2A with Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS14755 and RR42_RS14760 are separated by 110 nucleotides RR42_RS14760 and RR42_RS14765 are separated by 19 nucleotides RR42_RS14765 and RR42_RS14770 are separated by 67 nucleotides RR42_RS14770 and RR42_RS14775 are separated by 195 nucleotides
RR42_RS14755: RR42_RS14755 - hypothetical protein, at 3,180,382 to 3,181,008
_RS14755
RR42_RS14760: RR42_RS14760 - molybdenum cofactor biosynthesis protein MogA, at 3,181,119 to 3,181,709
_RS14760
RR42_RS14765: RR42_RS14765 - transporter, at 3,181,729 to 3,182,610
_RS14765
RR42_RS14770: RR42_RS14770 - oligoribonuclease, at 3,182,678 to 3,183,328
_RS14770
RR42_RS14775: RR42_RS14775 - peptidase M48, at 3,183,524 to 3,184,771
_RS14775
Position (kb)
3181
3182
3183 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3180.934 kb on - strand, within RR42_RS14755 at 3181.123 kb on + strand at 3181.124 kb on - strand at 3181.164 kb on + strand at 3181.165 kb on - strand at 3181.165 kb on - strand at 3181.165 kb on - strand at 3181.214 kb on + strand, within RR42_RS14760 at 3181.215 kb on - strand, within RR42_RS14760 at 3181.609 kb on - strand, within RR42_RS14760 at 3181.609 kb on - strand, within RR42_RS14760 at 3181.635 kb on + strand, within RR42_RS14760 at 3181.635 kb on + strand, within RR42_RS14760 at 3181.745 kb on + strand at 3181.746 kb on - strand at 3181.746 kb on - strand at 3181.746 kb on - strand at 3182.547 kb on - strand at 3182.625 kb on + strand at 3183.413 kb on - strand at 3183.413 kb on - strand at 3183.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM remove 3,180,934 - RR42_RS14755 0.88 -0.1 3,181,123 + -3.8 3,181,124 - -1.9 3,181,164 + +0.5 3,181,165 - -0.7 3,181,165 - -1.9 3,181,165 - -2.1 3,181,214 + RR42_RS14760 0.16 -0.2 3,181,215 - RR42_RS14760 0.16 -1.3 3,181,609 - RR42_RS14760 0.83 -1.7 3,181,609 - RR42_RS14760 0.83 -1.3 3,181,635 + RR42_RS14760 0.87 -1.8 3,181,635 + RR42_RS14760 0.87 -1.9 3,181,745 + -0.1 3,181,746 - +0.2 3,181,746 - +1.7 3,181,746 - +0.2 3,182,547 - -0.6 3,182,625 + -0.6 3,183,413 - -0.4 3,183,413 - -1.5 3,183,413 - +1.6
Or see this region's nucleotide sequence