Experiment: R2A with Cobalt chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS12765 and RR42_RS12770 are separated by 433 nucleotides RR42_RS12770 and RR42_RS12775 are separated by 58 nucleotides RR42_RS12775 and RR42_RS12780 are separated by 100 nucleotides RR42_RS12780 and RR42_RS12785 are separated by 179 nucleotides
RR42_RS12765: RR42_RS12765 - protein kinase, at 2,741,615 to 2,743,696
_RS12765
RR42_RS12770: RR42_RS12770 - hypothetical protein, at 2,744,130 to 2,744,387
_RS12770
RR42_RS12775: RR42_RS12775 - hypothetical protein, at 2,744,446 to 2,744,703
_RS12775
RR42_RS12780: RR42_RS12780 - hypothetical protein, at 2,744,804 to 2,745,067
_RS12780
RR42_RS12785: RR42_RS12785 - hypothetical protein, at 2,745,247 to 2,745,465
_RS12785
Position (kb)
2744
2745 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2743.240 kb on - strand, within RR42_RS12765 at 2743.240 kb on - strand, within RR42_RS12765 at 2743.240 kb on - strand, within RR42_RS12765 at 2743.287 kb on + strand, within RR42_RS12765 at 2743.287 kb on + strand, within RR42_RS12765 at 2743.348 kb on + strand, within RR42_RS12765 at 2743.348 kb on + strand, within RR42_RS12765 at 2743.527 kb on + strand at 2743.528 kb on - strand at 2743.669 kb on + strand at 2743.669 kb on + strand at 2743.673 kb on + strand at 2743.673 kb on + strand at 2743.673 kb on + strand at 2743.673 kb on + strand at 2743.674 kb on - strand at 2743.674 kb on - strand at 2743.764 kb on - strand at 2743.781 kb on - strand at 2743.781 kb on - strand at 2743.783 kb on + strand at 2743.874 kb on + strand at 2743.874 kb on + strand at 2743.875 kb on - strand at 2744.698 kb on + strand at 2745.157 kb on + strand at 2745.158 kb on - strand at 2745.158 kb on - strand at 2745.158 kb on - strand at 2745.158 kb on - strand at 2745.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM remove 2,743,240 - RR42_RS12765 0.78 +0.4 2,743,240 - RR42_RS12765 0.78 -0.9 2,743,240 - RR42_RS12765 0.78 +1.8 2,743,287 + RR42_RS12765 0.80 +1.2 2,743,287 + RR42_RS12765 0.80 +0.2 2,743,348 + RR42_RS12765 0.83 -0.3 2,743,348 + RR42_RS12765 0.83 +0.5 2,743,527 + -0.1 2,743,528 - +0.7 2,743,669 + -0.6 2,743,669 + +1.4 2,743,673 + +0.5 2,743,673 + +2.2 2,743,673 + -3.2 2,743,673 + +0.2 2,743,674 - +1.0 2,743,674 - +0.1 2,743,764 - +0.9 2,743,781 - +0.3 2,743,781 - +0.9 2,743,783 + +1.0 2,743,874 + -0.4 2,743,874 + -4.1 2,743,875 - -0.1 2,744,698 + +0.9 2,745,157 + +1.1 2,745,158 - -1.8 2,745,158 - +0.0 2,745,158 - +0.8 2,745,158 - -1.5 2,745,158 - +0.3
Or see this region's nucleotide sequence