Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02870

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02865 and RR42_RS02870 are separated by 307 nucleotidesRR42_RS02870 and RR42_RS02875 are separated by 33 nucleotides RR42_RS02865: RR42_RS02865 - chloride channel protein, at 638,142 to 639,830 _RS02865 RR42_RS02870: RR42_RS02870 - RNA helicase, at 640,138 to 641,826 _RS02870 RR42_RS02875: RR42_RS02875 - serine/threonine protein kinase, at 641,860 to 642,921 _RS02875 Position (kb) 640 641 642Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 639.195 kb on + strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.196 kb on - strand, within RR42_RS02865at 639.557 kb on + strand, within RR42_RS02865at 639.557 kb on + strand, within RR42_RS02865at 639.558 kb on - strand, within RR42_RS02865at 639.558 kb on - strand, within RR42_RS02865at 639.559 kb on + strand, within RR42_RS02865at 639.559 kb on + strand, within RR42_RS02865at 639.560 kb on - strand, within RR42_RS02865at 639.678 kb on + strandat 639.689 kb on + strandat 639.789 kb on - strandat 639.996 kb on - strandat 640.000 kb on + strandat 640.001 kb on - strandat 640.173 kb on + strandat 640.173 kb on + strandat 640.174 kb on - strandat 640.174 kb on - strandat 640.200 kb on + strandat 640.200 kb on + strandat 640.200 kb on + strandat 640.200 kb on + strandat 640.201 kb on - strandat 640.201 kb on - strandat 640.201 kb on - strandat 640.201 kb on - strandat 640.201 kb on - strandat 640.437 kb on + strand, within RR42_RS02870at 640.441 kb on + strand, within RR42_RS02870at 640.441 kb on + strand, within RR42_RS02870at 640.442 kb on - strand, within RR42_RS02870at 640.792 kb on - strand, within RR42_RS02870at 640.823 kb on - strand, within RR42_RS02870at 641.107 kb on + strand, within RR42_RS02870at 641.107 kb on + strand, within RR42_RS02870at 641.108 kb on - strand, within RR42_RS02870at 641.108 kb on - strand, within RR42_RS02870at 641.108 kb on - strand, within RR42_RS02870at 641.134 kb on + strand, within RR42_RS02870at 641.134 kb on + strand, within RR42_RS02870at 641.135 kb on - strand, within RR42_RS02870at 641.135 kb on - strand, within RR42_RS02870at 641.824 kb on + strandat 641.858 kb on + strandat 641.858 kb on + strandat 641.858 kb on + strandat 641.859 kb on - strandat 641.932 kb on + strandat 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.015 kb on + strand, within RR42_RS02875at 642.016 kb on - strand, within RR42_RS02875at 642.016 kb on - strand, within RR42_RS02875at 642.016 kb on - strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.019 kb on + strand, within RR42_RS02875at 642.020 kb on - strand, within RR42_RS02875at 642.020 kb on - strand, within RR42_RS02875at 642.079 kb on + strand, within RR42_RS02875at 642.271 kb on - strand, within RR42_RS02875at 642.331 kb on + strand, within RR42_RS02875at 642.405 kb on + strand, within RR42_RS02875at 642.405 kb on + strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.406 kb on - strand, within RR42_RS02875at 642.604 kb on - strand, within RR42_RS02875at 642.697 kb on + strand, within RR42_RS02875at 642.698 kb on - strand, within RR42_RS02875

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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639,195 + RR42_RS02865 0.62 -0.9
639,196 - RR42_RS02865 0.62 +0.9
639,196 - RR42_RS02865 0.62 +0.3
639,196 - RR42_RS02865 0.62 -1.6
639,196 - RR42_RS02865 0.62 -0.4
639,196 - RR42_RS02865 0.62 +0.9
639,557 + RR42_RS02865 0.84 +0.2
639,557 + RR42_RS02865 0.84 +0.6
639,558 - RR42_RS02865 0.84 -0.1
639,558 - RR42_RS02865 0.84 -1.4
639,559 + RR42_RS02865 0.84 -1.6
639,559 + RR42_RS02865 0.84 +0.5
639,560 - RR42_RS02865 0.84 +1.0
639,678 + +1.9
639,689 + -0.3
639,789 - +0.3
639,996 - +1.1
640,000 + +0.9
640,001 - +1.0
640,173 + +0.1
640,173 + +1.0
640,174 - -2.4
640,174 - -1.3
640,200 + +0.2
640,200 + +0.4
640,200 + +0.3
640,200 + +3.0
640,201 - -0.5
640,201 - +1.2
640,201 - +1.3
640,201 - +0.1
640,201 - -2.0
640,437 + RR42_RS02870 0.18 +1.3
640,441 + RR42_RS02870 0.18 -0.5
640,441 + RR42_RS02870 0.18 +1.2
640,442 - RR42_RS02870 0.18 +2.4
640,792 - RR42_RS02870 0.39 +0.3
640,823 - RR42_RS02870 0.41 +2.8
641,107 + RR42_RS02870 0.57 +0.2
641,107 + RR42_RS02870 0.57 +1.6
641,108 - RR42_RS02870 0.57 +2.1
641,108 - RR42_RS02870 0.57 -1.7
641,108 - RR42_RS02870 0.57 -1.7
641,134 + RR42_RS02870 0.59 +0.8
641,134 + RR42_RS02870 0.59 +1.4
641,135 - RR42_RS02870 0.59 +0.3
641,135 - RR42_RS02870 0.59 -0.6
641,824 + -0.4
641,858 + -1.5
641,858 + +0.7
641,858 + +0.2
641,859 - +2.0
641,932 + +0.2
642,015 + RR42_RS02875 0.15 +1.0
642,015 + RR42_RS02875 0.15 +0.1
642,015 + RR42_RS02875 0.15 +0.4
642,015 + RR42_RS02875 0.15 +0.5
642,015 + RR42_RS02875 0.15 +1.9
642,015 + RR42_RS02875 0.15 -0.3
642,015 + RR42_RS02875 0.15 +0.4
642,016 - RR42_RS02875 0.15 +1.1
642,016 - RR42_RS02875 0.15 +0.7
642,016 - RR42_RS02875 0.15 -0.5
642,019 + RR42_RS02875 0.15 +0.7
642,019 + RR42_RS02875 0.15 +1.1
642,019 + RR42_RS02875 0.15 +2.8
642,019 + RR42_RS02875 0.15 +0.2
642,019 + RR42_RS02875 0.15 +0.9
642,019 + RR42_RS02875 0.15 +1.6
642,020 - RR42_RS02875 0.15 -1.5
642,020 - RR42_RS02875 0.15 -1.3
642,079 + RR42_RS02875 0.21 +4.8
642,271 - RR42_RS02875 0.39 -1.4
642,331 + RR42_RS02875 0.44 +0.8
642,405 + RR42_RS02875 0.51 +0.7
642,405 + RR42_RS02875 0.51 -0.0
642,406 - RR42_RS02875 0.51 +0.1
642,406 - RR42_RS02875 0.51 +0.5
642,406 - RR42_RS02875 0.51 +1.1
642,406 - RR42_RS02875 0.51 -0.3
642,406 - RR42_RS02875 0.51 +0.9
642,604 - RR42_RS02875 0.70 -0.5
642,697 + RR42_RS02875 0.79 +0.2
642,698 - RR42_RS02875 0.79 -0.4

Or see this region's nucleotide sequence