Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02840

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02835 and RR42_RS02840 overlap by 4 nucleotidesRR42_RS02840 and RR42_RS02845 are separated by 703 nucleotides RR42_RS02835: RR42_RS02835 - acyltransferase, at 631,208 to 632,815 _RS02835 RR42_RS02840: RR42_RS02840 - cation transporter, at 632,812 to 633,684 _RS02840 RR42_RS02845: RR42_RS02845 - 16S rRNA maturation RNase YbeY, at 634,388 to 635,143 _RS02845 Position (kb) 632 633 634Strain fitness (log2 ratio) -1 0 1 2at 632.816 kb on - strandat 633.183 kb on - strand, within RR42_RS02840at 633.241 kb on - strand, within RR42_RS02840at 633.315 kb on - strand, within RR42_RS02840at 633.315 kb on - strand, within RR42_RS02840at 633.318 kb on - strand, within RR42_RS02840at 633.375 kb on - strand, within RR42_RS02840at 633.500 kb on - strand, within RR42_RS02840at 633.726 kb on + strandat 633.726 kb on + strandat 633.726 kb on + strandat 633.727 kb on - strandat 633.727 kb on - strandat 633.727 kb on - strandat 633.727 kb on - strandat 633.727 kb on - strandat 633.799 kb on + strandat 633.799 kb on + strandat 633.800 kb on - strandat 633.800 kb on - strandat 633.826 kb on - strandat 633.874 kb on - strandat 633.918 kb on - strandat 634.342 kb on + strandat 634.342 kb on + strandat 634.343 kb on - strandat 634.353 kb on - strandat 634.383 kb on + strandat 634.383 kb on + strandat 634.383 kb on + strandat 634.383 kb on + strandat 634.384 kb on - strandat 634.384 kb on - strandat 634.389 kb on + strandat 634.389 kb on + strandat 634.390 kb on - strandat 634.390 kb on - strandat 634.422 kb on + strandat 634.423 kb on - strandat 634.423 kb on - strandat 634.423 kb on - strandat 634.423 kb on - strandat 634.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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632,816 - +1.4
633,183 - RR42_RS02840 0.42 +1.6
633,241 - RR42_RS02840 0.49 -1.1
633,315 - RR42_RS02840 0.58 +1.5
633,315 - RR42_RS02840 0.58 +0.9
633,318 - RR42_RS02840 0.58 +2.3
633,375 - RR42_RS02840 0.64 +1.3
633,500 - RR42_RS02840 0.79 +2.2
633,726 + -0.7
633,726 + -0.3
633,726 + -1.4
633,727 - -0.3
633,727 - +0.7
633,727 - -0.0
633,727 - +0.6
633,727 - -0.8
633,799 + +0.9
633,799 + +0.5
633,800 - +0.6
633,800 - +0.3
633,826 - +2.3
633,874 - +0.1
633,918 - +0.3
634,342 + +0.9
634,342 + +0.7
634,343 - +0.0
634,353 - +1.7
634,383 + +0.5
634,383 + +1.3
634,383 + +1.7
634,383 + +0.3
634,384 - -0.6
634,384 - +0.9
634,389 + +1.3
634,389 + +1.1
634,390 - +0.3
634,390 - -0.3
634,422 + -0.0
634,423 - -0.6
634,423 - -1.1
634,423 - +2.4
634,423 - +0.9
634,423 - +0.3

Or see this region's nucleotide sequence