Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00695

Experiment: R2A with Cobalt chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00690 and RR42_RS00695 are separated by 159 nucleotidesRR42_RS00695 and RR42_RS00700 overlap by 4 nucleotidesRR42_RS00700 and RR42_RS00705 are separated by 57 nucleotides RR42_RS00690: RR42_RS00690 - ABC transporter permease, at 175,540 to 176,661 _RS00690 RR42_RS00695: RR42_RS00695 - biotin--[acetyl-CoA-carboxylase] synthetase, at 176,821 to 177,705 _RS00695 RR42_RS00700: RR42_RS00700 - pantothenate kinase, at 177,702 to 178,544 _RS00700 RR42_RS00705: RR42_RS00705 - hypothetical protein, at 178,602 to 179,330 _RS00705 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1at 176.111 kb on + strand, within RR42_RS00690at 176.169 kb on - strand, within RR42_RS00690at 176.180 kb on + strand, within RR42_RS00690at 176.181 kb on - strand, within RR42_RS00690at 176.181 kb on - strandat 176.184 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.635 kb on + strandat 176.635 kb on + strandat 176.636 kb on - strandat 176.636 kb on - strandat 176.697 kb on - strandat 176.697 kb on - strandat 176.754 kb on + strandat 176.755 kb on - strandat 176.755 kb on - strandat 176.763 kb on + strandat 176.763 kb on + strandat 178.567 kb on + strandat 178.567 kb on + strandat 178.568 kb on - strandat 178.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Cobalt chloride 0.3 mM
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176,111 + RR42_RS00690 0.51 -2.4
176,169 - RR42_RS00690 0.56 +0.7
176,180 + RR42_RS00690 0.57 -0.0
176,181 - RR42_RS00690 0.57 +0.4
176,181 - +1.1
176,184 + RR42_RS00690 0.57 -1.1
176,346 + RR42_RS00690 0.72 -0.6
176,346 + RR42_RS00690 0.72 +0.6
176,346 + RR42_RS00690 0.72 +1.7
176,346 + RR42_RS00690 0.72 +1.7
176,346 + RR42_RS00690 0.72 +0.0
176,346 + RR42_RS00690 0.72 +0.1
176,346 + RR42_RS00690 0.72 -2.1
176,346 + RR42_RS00690 0.72 +1.0
176,346 + RR42_RS00690 0.72 +0.8
176,346 + RR42_RS00690 0.72 +1.5
176,346 + RR42_RS00690 0.72 -0.0
176,346 + RR42_RS00690 0.72 +0.4
176,347 - RR42_RS00690 0.72 +1.0
176,347 - RR42_RS00690 0.72 +0.6
176,347 - RR42_RS00690 0.72 +1.7
176,347 - RR42_RS00690 0.72 -1.0
176,347 - RR42_RS00690 0.72 +0.2
176,347 - RR42_RS00690 0.72 +0.7
176,347 - RR42_RS00690 0.72 -0.1
176,347 - RR42_RS00690 0.72 +0.9
176,347 - RR42_RS00690 0.72 +0.9
176,347 - RR42_RS00690 0.72 +1.2
176,347 - RR42_RS00690 0.72 -0.3
176,347 - RR42_RS00690 0.72 -0.0
176,635 + -0.1
176,635 + +0.8
176,636 - +0.9
176,636 - -2.6
176,697 - -0.4
176,697 - -0.3
176,754 + +0.1
176,755 - +0.4
176,755 - -1.9
176,763 + +1.1
176,763 + -0.0
178,567 + +0.6
178,567 + +0.4
178,568 - -0.3
178,621 + -0.4

Or see this region's nucleotide sequence