Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5060

Experiment: apoplastic; Green bean; 6 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 6 days
6,001,203	+		Psyr_5058	0.70	-1.0
6,001,203	+		Psyr_5058	0.70	-0.1
6,001,282	-		Psyr_5058	0.88	-0.5
6,001,282	-		Psyr_5058	0.88	+0.3
6,001,312	+				-0.5
6,001,312	+				-0.8
6,001,312	+				+0.4
6,001,312	+				-3.4
6,001,312	+				-0.8
6,001,313	-				+0.7
6,001,313	-				-0.6
6,001,313	-				-0.8
6,001,313	-				+0.5
6,001,313	-				-1.7
6,001,400	+				-0.2
6,001,401	-				+0.9
6,001,401	-				-0.3
6,001,510	-		Psyr_5059	0.24	-0.7
6,001,510	-		Psyr_5059	0.24	-0.8
6,001,593	+		Psyr_5059	0.36	-0.4
6,001,619	+		Psyr_5059	0.40	-1.4
6,001,678	+		Psyr_5059	0.49	+0.1
6,001,678	+		Psyr_5059	0.49	-0.7
6,001,678	+		Psyr_5059	0.49	-0.4
6,001,678	+		Psyr_5059	0.49	-2.1
6,001,678	+		Psyr_5059	0.49	-0.2
6,001,678	+		Psyr_5059	0.49	-2.1
6,001,737	+		Psyr_5059	0.58	-0.7
6,001,737	+		Psyr_5059	0.58	-0.2
6,001,737	+		Psyr_5059	0.58	-1.9
6,001,737	+		Psyr_5059	0.58	+1.0
6,001,738	-		Psyr_5059	0.58	+1.8
6,001,738	-		Psyr_5059	0.58	+1.0
6,001,738	-		Psyr_5059	0.58	-1.9
6,001,738	-		Psyr_5059	0.58	-0.9
6,001,738	-		Psyr_5059	0.58	+0.9
6,001,845	+		Psyr_5059	0.74	+1.2
6,001,846	-		Psyr_5059	0.74	+0.2
6,001,846	-		Psyr_5059	0.74	+1.6
6,001,905	+		Psyr_5059	0.83	+0.8
6,001,906	-		Psyr_5059	0.83	+0.4
6,001,906	-		Psyr_5059	0.83	+0.6
6,001,971	-				-2.4
6,002,141	+				-0.9
6,002,471	+		Psyr_5060	0.17	+0.7
6,002,472	-		Psyr_5060	0.17	+1.6
6,002,472	-		Psyr_5060	0.17	+1.2
6,002,481	+		Psyr_5060	0.17	-0.6
6,002,481	+		Psyr_5060	0.17	-0.1
6,002,482	-		Psyr_5060	0.17	-0.1
6,002,535	+		Psyr_5060	0.20	+1.8
6,002,535	+		Psyr_5060	0.20	+3.0
6,002,535	+		Psyr_5060	0.20	-0.8
6,002,535	+		Psyr_5060	0.20	-1.3
6,002,535	+		Psyr_5060	0.20	-1.1
6,002,535	+		Psyr_5060	0.20	-0.7
6,002,536	-		Psyr_5060	0.20	-0.9
6,002,536	-		Psyr_5060	0.20	+1.5
6,002,536	-		Psyr_5060	0.20	-0.2
6,002,536	-		Psyr_5060	0.20	-0.0
6,002,747	+		Psyr_5060	0.32	-2.5
6,002,748	-		Psyr_5060	0.32	-0.6
6,002,748	-		Psyr_5060	0.32	-1.2
6,002,748	-		Psyr_5060	0.32	-0.4
6,002,905	-		Psyr_5060	0.41	+1.5
6,003,125	-		Psyr_5060	0.53	+0.1
6,003,138	+		Psyr_5060	0.53	+1.7
6,003,138	+		Psyr_5060	0.53	-2.1
6,003,139	-		Psyr_5060	0.54	-0.4
6,003,147	+		Psyr_5060	0.54	-0.8
6,003,148	-		Psyr_5060	0.54	+1.2
6,003,148	-		Psyr_5060	0.54	+1.2
6,003,148	-		Psyr_5060	0.54	+0.4
6,003,154	+		Psyr_5060	0.54	+0.8
6,003,171	+		Psyr_5060	0.55	+3.5
6,003,171	+		Psyr_5060	0.55	+0.6
6,003,171	+		Psyr_5060	0.55	+1.6
6,003,171	+		Psyr_5060	0.55	-1.0
6,003,171	+		Psyr_5060	0.55	+0.6
6,003,171	+		Psyr_5060	0.55	+0.1
6,003,172	-		Psyr_5060	0.55	+0.6
6,003,172	-		Psyr_5060	0.55	-1.8
6,003,172	-		Psyr_5060	0.55	-2.2
6,003,172	-		Psyr_5060	0.55	-0.4
6,003,172	-		Psyr_5060	0.55	-0.1
6,003,172	-		Psyr_5060	0.55	+1.0
6,003,172	-		Psyr_5060	0.55	-0.2
6,003,302	-		Psyr_5060	0.63	+1.1
6,003,429	+		Psyr_5060	0.70	-1.3
6,003,430	-		Psyr_5060	0.70	+2.7
6,003,430	-		Psyr_5060	0.70	+1.3
6,003,430	-		Psyr_5060	0.70	+1.0
6,003,541	+		Psyr_5060	0.76	+0.8
6,003,541	+		Psyr_5060	0.76	-1.8
6,003,541	+		Psyr_5060	0.76	+0.8
6,003,542	-		Psyr_5060	0.76	+0.0
6,003,543	+		Psyr_5060	0.76	+1.4
6,003,543	+		Psyr_5060	0.76	+0.1
6,003,543	+		Psyr_5060	0.76	+0.7
6,003,543	+		Psyr_5060	0.76	+1.4
6,003,543	+		Psyr_5060	0.76	-0.0
6,003,544	-		Psyr_5060	0.76	+0.3
6,003,544	-		Psyr_5060	0.76	+1.6
6,003,544	-		Psyr_5060	0.76	-0.8
6,003,544	-		Psyr_5060	0.76	+1.3
6,003,544	-		Psyr_5060	0.76	+0.3
6,003,544	-		Psyr_5060	0.76	+1.6
6,003,550	+		Psyr_5060	0.76	+0.4
6,003,635	-		Psyr_5060	0.81	+0.1
6,003,650	-		Psyr_5060	0.82	-0.4
6,003,699	+		Psyr_5060	0.84	+0.8
6,003,699	+		Psyr_5060	0.84	+0.8
6,003,700	-		Psyr_5060	0.85	-0.3
6,003,983	+				-0.6
6,004,024	+				-0.3
6,004,024	+				+0.5
6,004,024	+				+1.8
6,004,025	-				-1.6
6,004,025	-				-0.6
6,004,025	-				+0.5
6,004,042	+				+1.2
6,004,043	-				-0.8
6,004,043	-				-1.0
6,004,056	-				-1.2
6,004,077	+				+1.7
6,004,077	+				+0.2
6,004,083	+				-1.7
6,004,083	+				-1.3
6,004,083	+				+1.9
6,004,083	+				-0.9
6,004,083	+				+0.1
6,004,084	-				+0.5
6,004,153	+				-0.7
6,004,153	+				+0.9
6,004,154	-				+0.5
6,004,238	-		Psyr_5061	0.11	-1.0
6,004,238	-		Psyr_5061	0.11	-1.6
6,004,238	-		Psyr_5061	0.11	+2.4
6,004,240	+		Psyr_5061	0.11	-0.9
6,004,240	+		Psyr_5061	0.11	-1.8
6,004,241	-		Psyr_5061	0.11	-1.4
6,004,357	+		Psyr_5061	0.20	+0.6
6,004,358	-		Psyr_5061	0.20	+1.2
6,004,358	-		Psyr_5061	0.20	-1.1
6,004,358	-		Psyr_5061	0.20	+0.5
6,004,358	-		Psyr_5061	0.20	-0.9
6,004,382	+		Psyr_5061	0.21	+0.3
6,004,384	+		Psyr_5061	0.21	+0.0
6,004,384	+		Psyr_5061	0.21	-1.2
6,004,430	-		Psyr_5061	0.25	+1.6
6,004,580	+		Psyr_5061	0.35	-2.0
6,004,648	+		Psyr_5061	0.40	+1.4
6,004,648	+		Psyr_5061	0.40	+0.8
6,004,648	+		Psyr_5061	0.40	-1.0
6,004,648	+		Psyr_5061	0.40	-1.7
6,004,648	+		Psyr_5061	0.40	+3.2
6,004,648	+		Psyr_5061	0.40	+1.4
6,004,648	+		Psyr_5061	0.40	+0.0
6,004,648	+		Psyr_5061	0.40	+1.5
6,004,648	+		Psyr_5061	0.40	+1.1
6,004,648	+		Psyr_5061	0.40	+0.5
6,004,648	+		Psyr_5061	0.40	+0.9
6,004,648	+		Psyr_5061	0.40	-2.0
6,004,648	+		Psyr_5061	0.40	-0.2
6,004,649	-		Psyr_5061	0.40	-1.5
6,004,649	-		Psyr_5061	0.40	-0.3
6,004,649	-		Psyr_5061	0.40	+1.7
6,004,649	-		Psyr_5061	0.40	-1.7
6,004,649	-		Psyr_5061	0.40	-2.8
6,004,738	+		Psyr_5061	0.46	+0.1
6,004,739	-		Psyr_5061	0.47	-0.3
6,004,739	-				-0.4
6,004,739	-		Psyr_5061	0.47	-3.3
6,004,739	-		Psyr_5061	0.47	-2.1
6,004,739	-		Psyr_5061	0.47	+0.9