Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4038

Experiment: apoplastic; Green bean; 6 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 6 days
4,821,419	+		Psyr_4037	0.67	+0.7
4,821,419	+		Psyr_4037	0.67	+1.2
4,821,419	+		Psyr_4037	0.67	+0.0
4,821,419	+		Psyr_4037	0.67	-2.3
4,821,419	+		Psyr_4037	0.67	+3.4
4,821,420	-		Psyr_4037	0.67	+0.1
4,821,420	-		Psyr_4037	0.67	-0.2
4,821,420	-		Psyr_4037	0.67	+1.0
4,821,420	-		Psyr_4037	0.67	+4.2
4,821,540	-		Psyr_4037	0.71	+1.2
4,821,552	+		Psyr_4037	0.72	+0.9
4,821,584	+		Psyr_4037	0.73	-1.4
4,821,584	+		Psyr_4037	0.73	+0.0
4,821,584	+		Psyr_4037	0.73	-0.3
4,821,585	-		Psyr_4037	0.73	-0.3
4,821,627	+		Psyr_4037	0.74	+0.5
4,821,627	+		Psyr_4037	0.74	-3.6
4,821,627	+		Psyr_4037	0.74	-0.1
4,821,627	+		Psyr_4037	0.74	-0.7
4,821,627	+		Psyr_4037	0.74	-1.8
4,821,627	+		Psyr_4037	0.74	-1.4
4,821,627	+		Psyr_4037	0.74	+1.0
4,821,627	+		Psyr_4037	0.74	+0.4
4,821,627	+		Psyr_4037	0.74	+0.4
4,821,627	+		Psyr_4037	0.74	-0.3
4,821,627	+		Psyr_4037	0.74	-2.2
4,821,628	-		Psyr_4037	0.74	-2.6
4,821,628	-		Psyr_4037	0.74	+0.9
4,821,628	-		Psyr_4037	0.74	+0.0
4,821,628	-		Psyr_4037	0.74	+0.6
4,821,628	-		Psyr_4037	0.74	-1.9
4,821,628	-		Psyr_4037	0.74	+1.5
4,821,631	+		Psyr_4037	0.74	+0.7
4,821,631	+		Psyr_4037	0.74	+2.3
4,821,631	+		Psyr_4037	0.74	-0.5
4,821,631	+		Psyr_4037	0.74	+0.9
4,821,631	+		Psyr_4037	0.74	+2.4
4,821,631	+		Psyr_4037	0.74	-2.2
4,821,631	+		Psyr_4037	0.74	+0.2
4,821,631	+		Psyr_4037	0.74	-0.7
4,821,631	+		Psyr_4037	0.74	+0.5
4,821,631	+		Psyr_4037	0.74	+1.5
4,821,632	-		Psyr_4037	0.74	-1.0
4,821,632	-		Psyr_4037	0.74	-2.0
4,821,632	-		Psyr_4037	0.74	-2.6
4,821,632	-		Psyr_4037	0.74	+0.1
4,821,632	-		Psyr_4037	0.74	+1.0
4,821,632	-		Psyr_4037	0.74	+1.0
4,821,632	-		Psyr_4037	0.74	+0.6
4,821,632	-		Psyr_4037	0.74	-0.4
4,821,632	-		Psyr_4037	0.74	-0.3
4,821,632	-		Psyr_4037	0.74	-0.2
4,821,632	-		Psyr_4037	0.74	+0.4
4,821,648	+		Psyr_4037	0.75	+0.5
4,821,648	+		Psyr_4037	0.75	+1.3
4,821,648	+		Psyr_4037	0.75	-0.6
4,821,648	+		Psyr_4037	0.75	+0.1
4,821,648	+		Psyr_4037	0.75	-0.2
4,821,649	-		Psyr_4037	0.75	+0.0
4,821,649	-		Psyr_4037	0.75	-1.0
4,821,649	-		Psyr_4037	0.75	-1.6
4,821,649	-		Psyr_4037	0.75	+1.4
4,821,649	-		Psyr_4037	0.75	-0.3
4,821,652	+		Psyr_4037	0.75	+1.4
4,821,690	+		Psyr_4037	0.76	+0.2
4,821,692	+		Psyr_4037	0.76	-0.2
4,821,714	+		Psyr_4037	0.77	+0.4
4,821,714	+		Psyr_4037	0.77	-0.6
4,821,714	+		Psyr_4037	0.77	+0.4
4,821,715	-		Psyr_4037	0.77	-1.0
4,821,715	-		Psyr_4037	0.77	-1.2
4,821,715	-		Psyr_4037	0.77	+0.8
4,821,715	-		Psyr_4037	0.77	-1.0
4,821,715	-		Psyr_4037	0.77	-1.0
4,821,718	+		Psyr_4037	0.77	+0.6
4,821,718	+		Psyr_4037	0.77	+0.0
4,821,718	+		Psyr_4037	0.77	+0.7
4,821,718	+		Psyr_4037	0.77	+1.0
4,821,718	+		Psyr_4037	0.77	+0.0
4,821,719	-		Psyr_4037	0.77	+1.8
4,821,719	-		Psyr_4037	0.77	-0.5
4,821,719	-		Psyr_4037	0.77	+0.3
4,821,719	-		Psyr_4037	0.77	+0.3
4,821,719	-		Psyr_4037	0.77	+2.0
4,821,722	+		Psyr_4037	0.77	-3.0
4,821,734	+		Psyr_4037	0.78	+0.3
4,821,761	+		Psyr_4037	0.79	-0.9
4,821,761	+		Psyr_4037	0.79	-1.0
4,821,761	+		Psyr_4037	0.79	-2.3
4,821,761	+		Psyr_4037	0.79	+3.0
4,821,762	-		Psyr_4037	0.79	-0.2
4,821,762	-		Psyr_4037	0.79	-0.5
4,821,762	-		Psyr_4037	0.79	+0.0
4,821,775	+		Psyr_4037	0.79	-2.3
4,821,775	+		Psyr_4037	0.79	-0.6
4,821,776	-		Psyr_4037	0.79	+2.2
4,821,776	-		Psyr_4037	0.79	-0.5
4,821,778	-		Psyr_4037	0.79	-0.8
4,821,783	+		Psyr_4037	0.80	-1.8
4,821,892	+				+1.0
4,822,003	+		Psyr_4037	0.87	+2.0
4,822,034	+		Psyr_4037	0.88	-0.8
4,822,034	+		Psyr_4037	0.88	-2.7
4,822,034	+		Psyr_4037	0.88	-1.4
4,822,034	+		Psyr_4037	0.88	+1.6
4,822,034	+		Psyr_4037	0.88	-0.5
4,822,034	+		Psyr_4037	0.88	-1.6
4,822,035	-		Psyr_4037	0.88	+0.1
4,822,035	-		Psyr_4037	0.88	-2.2
4,822,035	-		Psyr_4037	0.88	-0.7
4,822,035	-		Psyr_4037	0.88	-2.9
4,822,035	-		Psyr_4037	0.88	-0.2
4,822,156	+				+1.2
4,822,187	+				+0.0
4,822,188	-				+0.5
4,822,325	+				+0.6
4,822,326	-				-2.2
4,822,329	+				-2.6
4,822,330	-				+1.2
4,822,330	-				+0.6
4,822,346	-				+0.0
4,822,348	-				+1.4
4,822,420	+				+0.7
4,822,420	+				+1.3
4,822,420	+				-1.8
4,822,420	+				-0.6
4,822,421	-				-0.5
4,822,421	-				-1.2
4,822,421	-				-0.2
4,822,446	+				-0.5
4,822,446	+				-0.3
4,822,446	+				-2.0
4,822,446	+				-0.8
4,822,446	+				-1.2
4,822,447	-				-1.4
4,822,447	-				+0.6
4,822,447	-				+1.6
4,822,447	-				+1.7
4,822,447	-				-3.7
4,822,447	-				-3.4
4,822,490	+				+0.4
4,822,491	-				-1.2
4,822,528	+				-1.1
4,822,528	+				+2.3
4,822,532	-				-0.3
4,822,544	+				-1.0
4,822,544	+				+1.5
4,822,544	+				+1.4
4,822,544	+				-0.3
4,822,544	+				-1.6
4,822,544	+				-0.4
4,822,544	+				-1.0
4,822,544	+				-2.2
4,822,544	+				+1.0
4,822,545	-				-2.0
4,822,545	-				+0.6
4,822,545	-				-0.4
4,822,545	-				-0.3
4,822,545	-				-0.7
4,822,545	-				-1.0
4,822,545	-				+0.2
4,822,545	-				+2.2
4,822,613	+				-1.8
4,822,613	+				-1.1
4,822,613	+				+0.5
4,822,613	+				+1.3
4,822,614	-				+1.2
4,822,614	-				+0.8
4,822,739	+		Psyr_4038	0.12	+1.3
4,822,802	+		Psyr_4038	0.15	+0.2
4,822,828	+		Psyr_4038	0.16	+2.6
4,822,828	+		Psyr_4038	0.16	-2.8
4,822,828	+		Psyr_4038	0.16	+1.0
4,822,828	+		Psyr_4038	0.16	+0.1
4,822,828	+		Psyr_4038	0.16	+0.3
4,822,829	-		Psyr_4038	0.16	+1.4
4,822,829	-		Psyr_4038	0.16	+1.3
4,822,833	+		Psyr_4038	0.16	+1.3
4,822,834	-		Psyr_4038	0.16	+0.4
4,822,834	-		Psyr_4038	0.16	-1.0
4,822,908	+		Psyr_4038	0.19	-1.8
4,822,908	+		Psyr_4038	0.19	-3.7
4,822,908	+		Psyr_4038	0.19	+1.1
4,822,908	+		Psyr_4038	0.19	-0.8
4,822,909	-		Psyr_4038	0.19	-1.8
4,822,909	-		Psyr_4038	0.19	-0.8
4,822,909	-		Psyr_4038	0.19	-1.6
4,822,909	-		Psyr_4038	0.19	-0.3
4,822,912	+		Psyr_4038	0.19	+0.4
4,822,912	+		Psyr_4038	0.19	-0.0
4,822,912	+		Psyr_4038	0.19	-1.6
4,822,913	-		Psyr_4038	0.19	-0.4
4,822,913	-		Psyr_4038	0.19	-1.2
4,822,913	-		Psyr_4038	0.19	-1.7
4,822,913	-		Psyr_4038	0.19	+1.0
4,822,913	-		Psyr_4038	0.19	+0.6
4,822,913	-		Psyr_4038	0.19	-0.7
4,822,921	+		Psyr_4038	0.19	+1.4
4,822,921	+		Psyr_4038	0.19	+1.2
4,822,921	+		Psyr_4038	0.19	-0.6
4,822,921	+		Psyr_4038	0.19	-2.7
4,822,921	+		Psyr_4038	0.19	+1.6
4,822,921	+		Psyr_4038	0.19	-2.2
4,822,921	+		Psyr_4038	0.19	-0.6
4,822,921	+		Psyr_4038	0.19	-0.6
4,822,921	+		Psyr_4038	0.19	+0.1
4,822,921	+		Psyr_4038	0.19	-0.2
4,822,922	-		Psyr_4038	0.19	-0.1
4,822,922	-		Psyr_4038	0.19	-1.6
4,822,922	-		Psyr_4038	0.19	-1.3
4,822,922	-		Psyr_4038	0.19	+1.0
4,822,922	-		Psyr_4038	0.19	-0.8
4,822,922	-		Psyr_4038	0.19	+0.6
4,822,922	-		Psyr_4038	0.19	+0.8
4,822,922	-		Psyr_4038	0.19	-0.6
4,822,922	-		Psyr_4038	0.19	-0.1
4,822,922	-		Psyr_4038	0.19	-1.8
4,822,925	+		Psyr_4038	0.19	-0.2
4,822,925	+		Psyr_4038	0.19	-2.2
4,822,925	+		Psyr_4038	0.19	+1.2
4,822,925	+		Psyr_4038	0.19	-0.5
4,822,925	+		Psyr_4038	0.19	-1.6
4,822,926	-		Psyr_4038	0.19	+0.9
4,822,926	-		Psyr_4038	0.19	-0.2
4,822,926	-		Psyr_4038	0.19	-1.4
4,822,926	-		Psyr_4038	0.19	-0.2
4,822,926	-		Psyr_4038	0.19	+1.5
4,822,938	+		Psyr_4038	0.20	+1.0
4,822,938	+		Psyr_4038	0.20	+1.0
4,822,938	+		Psyr_4038	0.20	-0.1
4,822,939	-		Psyr_4038	0.20	+1.9
4,822,939	-		Psyr_4038	0.20	-0.6
4,823,169	-		Psyr_4038	0.29	+0.9
4,823,334	+		Psyr_4038	0.35	-2.9
4,823,334	+		Psyr_4038	0.35	+0.8
4,823,334	+		Psyr_4038	0.35	+0.1
4,823,420	+		Psyr_4038	0.38	-1.1
4,823,421	-		Psyr_4038	0.38	+0.8
4,823,421	-		Psyr_4038	0.38	-0.8
4,823,531	+		Psyr_4038	0.42	+2.0
4,823,531	+		Psyr_4038	0.42	+1.0
4,823,531	+		Psyr_4038	0.42	-1.8
4,823,531	+		Psyr_4038	0.42	+0.5
4,823,531	+		Psyr_4038	0.42	+1.4
4,823,531	+		Psyr_4038	0.42	+1.0
4,823,804	+		Psyr_4038	0.53	-1.2
4,823,804	+		Psyr_4038	0.53	+0.6
4,823,804	+		Psyr_4038	0.53	+1.4
4,823,804	+		Psyr_4038	0.53	+0.0
4,823,804	+		Psyr_4038	0.53	+1.7
4,823,804	+		Psyr_4038	0.53	-0.4
4,823,804	+		Psyr_4038	0.53	+0.6
4,823,805	-		Psyr_4038	0.53	+0.8
4,823,805	-		Psyr_4038	0.53	-0.2
4,823,805	-		Psyr_4038	0.53	-2.4
4,823,810	+		Psyr_4038	0.53	-0.4
4,823,810	+		Psyr_4038	0.53	+2.0
4,823,845	+		Psyr_4038	0.54	-0.3
4,823,845	+		Psyr_4038	0.54	-0.6
4,823,889	-		Psyr_4038	0.56	-1.0
4,823,965	+		Psyr_4038	0.59	-0.3
4,823,965	+		Psyr_4038	0.59	-0.6
4,823,966	-		Psyr_4038	0.59	+0.1
4,823,966	-		Psyr_4038	0.59	-0.1
4,823,966	-		Psyr_4038	0.59	+0.1
4,823,966	-		Psyr_4038	0.59	+2.8
4,824,008	-		Psyr_4038	0.60	-1.0
4,824,008	-		Psyr_4038	0.60	+0.5
4,824,008	-		Psyr_4038	0.60	+0.2
4,824,104	+		Psyr_4038	0.64	+0.3
4,824,104	+		Psyr_4038	0.64	+0.9
4,824,104	+		Psyr_4038	0.64	-0.6
4,824,104	+		Psyr_4038	0.64	+0.0
4,824,104	+		Psyr_4038	0.64	+1.9
4,824,104	+		Psyr_4038	0.64	+0.2
4,824,104	+		Psyr_4038	0.64	+1.0
4,824,104	+		Psyr_4038	0.64	-1.3
4,824,162	-		Psyr_4038	0.66	+0.2
4,824,162	-		Psyr_4038	0.66	-0.2
4,824,212	+		Psyr_4038	0.68	+0.9
4,824,306	+		Psyr_4038	0.72	+1.0
4,824,307	-		Psyr_4038	0.72	+3.7
4,824,326	+		Psyr_4038	0.72	-0.7
4,824,326	+		Psyr_4038	0.72	-2.0
4,824,326	+		Psyr_4038	0.72	-0.6
4,824,326	+		Psyr_4038	0.72	-3.2
4,824,326	+		Psyr_4038	0.72	+0.6
4,824,326	+		Psyr_4038	0.72	+2.2
4,824,326	+		Psyr_4038	0.72	+0.3
4,824,327	-		Psyr_4038	0.72	+1.4
4,824,327	-		Psyr_4038	0.72	-1.5
4,824,329	+		Psyr_4038	0.72	-0.6
4,824,330	-		Psyr_4038	0.72	-0.1
4,824,330	-		Psyr_4038	0.72	-2.0
4,824,330	-		Psyr_4038	0.72	+1.8
4,824,344	+		Psyr_4038	0.73	+1.7
4,824,345	-		Psyr_4038	0.73	-1.3
4,824,409	+		Psyr_4038	0.75	-0.9
4,824,409	+		Psyr_4038	0.75	-1.2
4,824,409	+		Psyr_4038	0.75	-0.5
4,824,409	+		Psyr_4038	0.75	+0.2
4,824,409	+		Psyr_4038	0.75	-1.6
4,824,409	+		Psyr_4038	0.75	+2.3
4,824,409	+		Psyr_4038	0.75	-0.8
4,824,409	+		Psyr_4038	0.75	+1.1
4,824,409	+		Psyr_4038	0.75	-0.2
4,824,409	+		Psyr_4038	0.75	-0.3
4,824,409	+		Psyr_4038	0.75	+1.3
4,824,410	-		Psyr_4038	0.76	+1.1
4,824,410	-		Psyr_4038	0.76	+1.0
4,824,410	-		Psyr_4038	0.76	+0.7
4,824,410	-		Psyr_4038	0.76	-2.9
4,824,410	-		Psyr_4038	0.76	-0.1
4,824,410	-		Psyr_4038	0.76	-0.8
4,824,410	-		Psyr_4038	0.76	-0.8
4,824,414	-		Psyr_4038	0.76	+1.0
4,824,414	-		Psyr_4038	0.76	+1.9
4,824,414	-		Psyr_4038	0.76	+1.0
4,824,414	-		Psyr_4038	0.76	+1.7
4,824,414	-		Psyr_4038	0.76	+0.9
4,824,485	+		Psyr_4038	0.78	+0.3
4,824,486	-		Psyr_4038	0.78	+0.0
4,824,486	-		Psyr_4038	0.78	-0.6
4,824,503	+		Psyr_4038	0.79	-1.4
4,824,503	+		Psyr_4038	0.79	-1.9
4,824,503	+		Psyr_4038	0.79	+1.6
4,824,503	+		Psyr_4038	0.79	+0.2
4,824,504	-		Psyr_4038	0.79	+1.6
4,824,504	-		Psyr_4038	0.79	+0.2
4,824,504	-		Psyr_4038	0.79	+1.6
4,824,504	-		Psyr_4038	0.79	-1.0
4,824,504	-		Psyr_4038	0.79	+0.7
4,824,609	-		Psyr_4038	0.83	+1.0
4,824,618	-		Psyr_4038	0.83	+0.7
4,824,749	+		Psyr_4038	0.88	+0.6
4,824,755	+		Psyr_4038	0.89	+1.5
4,824,757	+		Psyr_4038	0.89	-1.1
4,824,758	-		Psyr_4038	0.89	-0.3
4,824,782	-		Psyr_4038	0.90	-0.6
4,824,815	-				-1.4
4,824,930	+				+0.2
4,825,003	+				-1.0
4,825,004	-				-2.2
4,825,014	+				+0.1
4,825,034	+				+0.3
4,825,034	+				-0.3
4,825,034	+				-0.2
4,825,034	+				+0.4
4,825,036	+				+0.3
4,825,037	-				+0.7
4,825,037	-				+1.3
4,825,052	+				-0.6
4,825,214	+				-0.1
4,825,214	+				+0.4
4,825,214	+				-2.2
4,825,215	-				-1.8
4,825,215	-				+1.1
4,825,215	-				-4.1
4,825,353	-				-0.1
4,825,397	-				-1.2
4,825,478	-				-1.3
4,825,492	+				+1.6
4,825,493	-				+0.5
4,825,513	+				+2.2
4,825,513	+				+0.6
4,825,514	-				+1.4
4,825,517	-				+0.5
4,825,537	+				+0.2
4,825,557	+				+0.0
4,825,557	+				+0.8
4,825,557	+				+0.9
4,825,558	-				+0.7
4,825,558	-				+1.1
4,825,558	-				-0.6
4,825,558	-				+0.0
4,825,560	-				-2.8
4,825,603	-		Psyr_4039	0.12	-2.6
4,825,652	+		Psyr_4039	0.22	+2.3
4,825,652	+		Psyr_4039	0.22	-0.4
4,825,653	-		Psyr_4039	0.23	+1.3
4,825,653	-		Psyr_4039	0.23	-0.1
4,825,653	-		Psyr_4039	0.23	-0.1
4,825,653	-		Psyr_4039	0.23	-1.8
4,825,872	+		Psyr_4039	0.67	-0.1
4,825,872	+		Psyr_4039	0.67	+0.2
4,825,873	-		Psyr_4039	0.68	-0.2
4,825,873	-		Psyr_4039	0.68	+0.6
4,825,923	+		Psyr_4039	0.78	-0.2
4,825,944	+		Psyr_4039	0.82	-0.6
4,825,944	+		Psyr_4039	0.82	-0.3
4,825,944	+		Psyr_4039	0.82	+1.0
4,825,944	+		Psyr_4039	0.82	+0.7
4,825,945	-		Psyr_4039	0.82	+0.4
4,825,945	-		Psyr_4039	0.82	+0.0
4,826,007	-				-0.1
4,826,022	+				+0.3
4,826,022	+				-0.4
4,826,023	-				-0.1
4,826,050	+				-1.1