Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3163

Experiment: apoplastic; Green bean; 6 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 6 days
3,790,242	+		Psyr_3161	0.76	-0.1
3,790,242	+		Psyr_3161	0.76	+0.6
3,790,242	+		Psyr_3161	0.76	-0.1
3,790,242	+		Psyr_3161	0.76	-2.8
3,790,242	+		Psyr_3161	0.76	+2.1
3,790,242	+		Psyr_3161	0.76	-0.1
3,790,242	+		Psyr_3161	0.76	-1.4
3,790,243	-		Psyr_3161	0.76	-0.3
3,790,243	-		Psyr_3161	0.76	-0.3
3,790,529	+				+0.1
3,790,540	-				-0.3
3,790,540	-				+1.3
3,790,554	+				+0.6
3,790,555	-				+0.7
3,790,627	-				-1.9
3,790,642	+				+0.2
3,790,642	+				-1.0
3,790,748	-				+1.1
3,790,818	+		Psyr_3162	0.18	+0.1
3,790,819	-		Psyr_3162	0.18	-1.6
3,790,819	-		Psyr_3162	0.18	-0.4
3,790,819	-		Psyr_3162	0.18	+1.5
3,790,837	+		Psyr_3162	0.24	+0.4
3,791,198	-				-3.5
3,791,205	-				-0.9
3,791,236	+				+1.4
3,791,236	+				-3.0
3,791,236	+				+0.7
3,791,236	+				+0.2
3,791,236	+				-1.6
3,791,237	-				-1.6
3,791,237	-				+0.2
3,791,237	-				+2.5
3,791,237	-				+0.5
3,791,237	-				+0.7
3,791,314	-				+1.3
3,791,315	+				-1.3
3,791,315	+				-2.3
3,791,315	+				-3.5
3,791,315	+				+0.2
3,791,315	+				-0.6
3,791,316	-				+1.4
3,791,316	-				-0.3
3,791,316	-				+1.3
3,791,316	-				+0.2
3,791,433	+				+1.7
3,791,434	-		Psyr_3163	0.16	+1.6
3,791,528	+		Psyr_3163	0.23	+1.6
3,791,528	+		Psyr_3163	0.23	-1.2
3,791,528	+		Psyr_3163	0.23	-1.0
3,791,528	+		Psyr_3163	0.23	-0.0
3,791,528	+		Psyr_3163	0.23	+0.7
3,791,529	-		Psyr_3163	0.23	+0.8
3,791,529	-		Psyr_3163	0.23	-0.4
3,791,529	-		Psyr_3163	0.23	+0.8
3,791,828	+		Psyr_3163	0.44	+0.2
3,791,828	+		Psyr_3163	0.44	-0.2
3,791,829	-		Psyr_3163	0.44	+0.8
3,791,969	+		Psyr_3163	0.54	+1.9
3,791,985	-		Psyr_3163	0.55	+1.2
3,792,006	-		Psyr_3163	0.56	+0.1
3,792,020	+		Psyr_3163	0.57	+2.1
3,792,021	-		Psyr_3163	0.57	+0.3
3,792,021	-		Psyr_3163	0.57	-1.9
3,792,047	+		Psyr_3163	0.59	+0.3
3,792,111	-		Psyr_3163	0.63	-0.3
3,792,111	-		Psyr_3163	0.63	-0.9
3,792,143	+		Psyr_3163	0.66	+0.1
3,792,143	+		Psyr_3163	0.66	-0.3
3,792,143	+		Psyr_3163	0.66	+2.1
3,792,144	-		Psyr_3163	0.66	-1.3
3,792,144	-		Psyr_3163	0.66	+0.7
3,792,144	-		Psyr_3163	0.66	-0.9
3,792,162	-		Psyr_3163	0.67	+0.2
3,792,203	+		Psyr_3163	0.70	+0.7
3,792,239	+		Psyr_3163	0.72	+0.5
3,792,240	-		Psyr_3163	0.72	+0.7
3,792,255	+		Psyr_3163	0.74	+1.1
3,792,256	-		Psyr_3163	0.74	+1.7
3,792,256	-		Psyr_3163	0.74	+1.7
3,792,256	-		Psyr_3163	0.74	+0.1
3,792,256	-		Psyr_3163	0.74	-1.3
3,792,256	-		Psyr_3163	0.74	+0.6
3,792,329	-		Psyr_3163	0.79	+0.9
3,792,329	-		Psyr_3163	0.79	+0.9
3,792,416	+		Psyr_3163	0.85	+1.7
3,792,416	+		Psyr_3163	0.85	-2.1
3,792,416	+		Psyr_3163	0.85	+0.3
3,792,416	+		Psyr_3163	0.85	+1.2
3,792,417	-		Psyr_3163	0.85	+0.1
3,792,417	-		Psyr_3163	0.85	+0.6
3,792,417	-		Psyr_3163	0.85	+0.7
3,792,417	-		Psyr_3163	0.85	+1.2
3,792,417	-		Psyr_3163	0.85	+0.5
3,792,417	-		Psyr_3163	0.85	-0.6
3,792,417	-		Psyr_3163	0.85	+0.9
3,792,477	+		Psyr_3163	0.89	-1.3
3,792,477	+		Psyr_3163	0.89	+0.3
3,792,477	+		Psyr_3163	0.89	-3.6
3,792,477	+		Psyr_3163	0.89	+1.7
3,792,477	+		Psyr_3163	0.89	-0.2
3,792,477	+		Psyr_3163	0.89	+0.9
3,792,478	-		Psyr_3163	0.89	+1.6
3,792,478	-		Psyr_3163	0.89	+0.3
3,792,479	+		Psyr_3163	0.89	+1.0
3,792,479	+		Psyr_3163	0.89	+2.0
3,792,480	-		Psyr_3163	0.89	-0.5
3,792,480	-		Psyr_3163	0.89	+1.3
3,792,504	-				-0.3
3,792,504	-				+0.6
3,792,504	-				+0.1
3,792,546	-				+0.6
3,792,672	-				-0.7
3,792,672	-				-0.3
3,792,819	+				+1.4
3,792,846	+				-0.0
3,792,847	-				-0.8
3,792,847	-				+1.4
3,793,170	+				-1.6
3,793,170	+				-2.1
3,793,172	+				+0.7
3,793,172	+				-0.7
3,793,172	+				+0.3
3,793,172	+				+0.7
3,793,172	+				+1.1
3,793,173	-				+0.5
3,793,173	-				+0.6
3,793,173	-				-0.5
3,793,173	-				+0.7
3,793,173	-				-1.3
3,793,180	+				+0.8
3,793,180	+				-0.5
3,793,181	-				+1.1
3,793,181	-				+2.2
3,793,181	-				-0.9
3,793,181	-				-1.6
3,793,181	-				-0.7
3,793,184	+				+0.0
3,793,184	+				-0.8
3,793,184	+				-2.8
3,793,184	+				-1.0
3,793,184	+				+1.3
3,793,184	+				-3.1
3,793,184	+				-0.0
3,793,185	-		Psyr_3164	0.10	-2.0
3,793,185	-		Psyr_3164	0.10	+1.4
3,793,185	-		Psyr_3164	0.10	-0.5
3,793,185	-		Psyr_3164	0.10	-2.0
3,793,185	-		Psyr_3164	0.10	-0.2
3,793,185	-		Psyr_3164	0.10	-1.0
3,793,185	-		Psyr_3164	0.10	+0.6
3,793,185	-		Psyr_3164	0.10	+0.2
3,793,208	+		Psyr_3164	0.14	+1.3
3,793,208	+		Psyr_3164	0.14	+0.4
3,793,208	+		Psyr_3164	0.14	-1.2
3,793,208	+		Psyr_3164	0.14	+0.6
3,793,208	+		Psyr_3164	0.14	+3.0
3,793,209	-		Psyr_3164	0.14	+0.9
3,793,209	-		Psyr_3164	0.14	-1.4
3,793,209	-		Psyr_3164	0.14	+1.2
3,793,209	-		Psyr_3164	0.14	+1.1
3,793,209	-		Psyr_3164	0.14	+0.7
3,793,212	+		Psyr_3164	0.14	-0.9
3,793,213	-		Psyr_3164	0.14	-1.2
3,793,213	-		Psyr_3164	0.14	+0.8
3,793,334	-		Psyr_3164	0.32	-1.6
3,793,408	+		Psyr_3164	0.43	-2.3
3,793,408	+		Psyr_3164	0.43	-1.1
3,793,408	+		Psyr_3164	0.43	-0.6
3,793,408	+		Psyr_3164	0.43	-1.9
3,793,408	+		Psyr_3164	0.43	+0.2
3,793,408	+		Psyr_3164	0.43	+0.1
3,793,408	+		Psyr_3164	0.43	-1.0
3,793,408	+		Psyr_3164	0.43	+0.3
3,793,409	-		Psyr_3164	0.43	+0.1
3,793,409	-		Psyr_3164	0.43	-0.6
3,793,409	-		Psyr_3164	0.43	-0.3
3,793,412	+		Psyr_3164	0.44	+1.6
3,793,412	+		Psyr_3164	0.44	+0.2
3,793,412	+		Psyr_3164	0.44	+0.5
3,793,413	-		Psyr_3164	0.44	+0.4
3,793,604	+		Psyr_3164	0.72	-2.4
3,793,604	+		Psyr_3164	0.72	+0.2
3,793,605	-		Psyr_3164	0.73	-0.3
3,793,605	-		Psyr_3164	0.73	-2.8