Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0461 and Psyr_0462 are separated by 152 nucleotides Psyr_0462 and Psyr_0463 are separated by 22 nucleotides Psyr_0463 and Psyr_0464 are separated by 134 nucleotides Psyr_0464 and Psyr_0465 overlap by 1 nucleotides
Psyr_0461: Psyr_0461 - Thioesterase superfamily, at 499,944 to 500,339
_0461
Psyr_0462: Psyr_0462 - Hydroxypyruvate isomerase, at 500,492 to 501,277
_0462
Psyr_0463: Psyr_0463 - Gluconate transporter, at 501,300 to 502,757
_0463
Psyr_0464: Psyr_0464 - hypothetical protein, at 502,892 to 503,530
_0464
Psyr_0465: Psyr_0465 - HopAN1 protein, at 503,530 to 504,819
_0465
Position (kb) 501
502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 500.307 kb on + strand at 500.329 kb on + strand at 500.329 kb on + strand at 500.329 kb on + strand at 500.329 kb on + strand at 500.330 kb on - strand at 500.376 kb on + strand at 500.376 kb on + strand at 500.376 kb on + strand at 500.418 kb on - strand at 500.418 kb on - strand at 500.481 kb on - strand at 500.580 kb on + strand, within Psyr_0462 at 500.616 kb on + strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.617 kb on - strand, within Psyr_0462 at 500.739 kb on + strand, within Psyr_0462 at 500.740 kb on - strand, within Psyr_0462 at 500.913 kb on + strand, within Psyr_0462 at 500.913 kb on + strand, within Psyr_0462 at 500.914 kb on - strand, within Psyr_0462 at 500.914 kb on - strand, within Psyr_0462 at 500.914 kb on - strand, within Psyr_0462 at 500.954 kb on + strand, within Psyr_0462 at 500.954 kb on + strand, within Psyr_0462 at 500.955 kb on - strand, within Psyr_0462 at 501.000 kb on + strand, within Psyr_0462 at 501.001 kb on - strand, within Psyr_0462 at 501.160 kb on - strand, within Psyr_0462 at 501.165 kb on + strand, within Psyr_0462 at 501.177 kb on + strand, within Psyr_0462 at 501.280 kb on + strand at 501.281 kb on - strand at 501.663 kb on + strand, within Psyr_0463 at 501.663 kb on + strand, within Psyr_0463 at 501.663 kb on + strand, within Psyr_0463 at 501.663 kb on + strand, within Psyr_0463 at 501.663 kb on + strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.664 kb on - strand, within Psyr_0463 at 501.770 kb on + strand, within Psyr_0463 at 502.145 kb on - strand, within Psyr_0463 at 502.369 kb on + strand, within Psyr_0463 at 502.687 kb on + strand at 502.688 kb on - strand at 502.842 kb on - strand at 502.842 kb on - strand at 503.010 kb on + strand, within Psyr_0464 at 503.010 kb on + strand, within Psyr_0464 at 503.149 kb on + strand, within Psyr_0464 at 503.461 kb on + strand, within Psyr_0464 at 503.475 kb on + strand at 503.476 kb on - strand at 503.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 500,307 + +0.5 500,329 + +0.5 500,329 + +0.7 500,329 + +0.4 500,329 + +0.9 500,330 - -1.1 500,376 + +0.7 500,376 + -1.2 500,376 + -2.4 500,418 - -0.1 500,418 - -3.1 500,481 - -1.6 500,580 + Psyr_0462 0.11 +0.4 500,616 + Psyr_0462 0.16 +0.2 500,617 - Psyr_0462 0.16 -0.1 500,617 - Psyr_0462 0.16 -2.3 500,617 - Psyr_0462 0.16 -0.0 500,617 - Psyr_0462 0.16 +0.9 500,617 - Psyr_0462 0.16 -0.6 500,617 - Psyr_0462 0.16 +1.0 500,739 + Psyr_0462 0.31 -0.8 500,740 - Psyr_0462 0.32 +0.3 500,913 + Psyr_0462 0.54 -0.5 500,913 + Psyr_0462 0.54 +1.2 500,914 - Psyr_0462 0.54 -0.8 500,914 - Psyr_0462 0.54 -2.1 500,914 - Psyr_0462 0.54 +1.9 500,954 + Psyr_0462 0.59 -0.2 500,954 + Psyr_0462 0.59 +0.5 500,955 - Psyr_0462 0.59 +2.2 501,000 + Psyr_0462 0.65 -0.1 501,001 - Psyr_0462 0.65 -0.8 501,160 - Psyr_0462 0.85 -2.0 501,165 + Psyr_0462 0.86 -0.9 501,177 + Psyr_0462 0.87 +0.5 501,280 + +0.2 501,281 - -1.4 501,663 + Psyr_0463 0.25 -2.3 501,663 + Psyr_0463 0.25 -0.5 501,663 + Psyr_0463 0.25 +0.5 501,663 + Psyr_0463 0.25 -0.0 501,663 + Psyr_0463 0.25 +0.2 501,664 - Psyr_0463 0.25 +0.6 501,664 - Psyr_0463 0.25 -0.2 501,664 - Psyr_0463 0.25 -2.8 501,664 - Psyr_0463 0.25 +1.8 501,664 - Psyr_0463 0.25 +1.3 501,770 + Psyr_0463 0.32 +1.2 502,145 - Psyr_0463 0.58 +1.6 502,369 + Psyr_0463 0.73 +0.2 502,687 + +0.3 502,688 - +1.1 502,842 - +3.7 502,842 - +0.1 503,010 + Psyr_0464 0.18 -0.7 503,010 + Psyr_0464 0.18 -1.4 503,149 + Psyr_0464 0.40 -2.6 503,461 + Psyr_0464 0.89 +0.7 503,475 + -0.0 503,476 - -2.9 503,476 - +1.2
Or see this region's nucleotide sequence