Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0440 and Psyr_0441 are separated by 692 nucleotides Psyr_0441 and Psyr_0442 are separated by 406 nucleotides
Psyr_0440: Psyr_0440 - Cobyrinic acid a,c-diamide synthase, at 477,339 to 478,118
_0440
Psyr_0441: Psyr_0441 - conserved hypothetical protein, at 478,811 to 479,206
_0441
Psyr_0442: Psyr_0442 - Malonate decarboxylase, alpha subunit, at 479,613 to 481,289
_0442
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 477.829 kb on - strand, within Psyr_0440 at 477.984 kb on + strand, within Psyr_0440 at 477.984 kb on + strand, within Psyr_0440 at 478.144 kb on + strand at 478.145 kb on - strand at 478.303 kb on - strand at 478.303 kb on - strand at 478.303 kb on - strand at 478.332 kb on - strand at 478.332 kb on - strand at 478.332 kb on - strand at 478.363 kb on + strand at 478.363 kb on + strand at 478.492 kb on + strand at 478.492 kb on + strand at 478.492 kb on + strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.493 kb on - strand at 478.494 kb on + strand at 478.494 kb on + strand at 478.494 kb on + strand at 478.494 kb on + strand at 478.495 kb on - strand at 478.495 kb on - strand at 478.495 kb on - strand at 478.743 kb on + strand at 478.743 kb on + strand at 478.743 kb on + strand at 478.743 kb on + strand at 478.743 kb on + strand at 478.812 kb on + strand at 478.829 kb on + strand at 478.829 kb on + strand at 478.829 kb on + strand at 478.829 kb on + strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.830 kb on - strand at 478.969 kb on + strand, within Psyr_0441 at 478.970 kb on - strand, within Psyr_0441 at 479.041 kb on - strand, within Psyr_0441 at 479.041 kb on - strand, within Psyr_0441 at 479.041 kb on - strand, within Psyr_0441 at 479.156 kb on + strand, within Psyr_0441 at 479.196 kb on - strand at 479.196 kb on - strand at 479.197 kb on + strand at 479.197 kb on + strand at 479.197 kb on + strand at 479.197 kb on + strand at 479.197 kb on + strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.198 kb on - strand at 479.255 kb on - strand at 479.283 kb on + strand at 479.296 kb on + strand at 479.305 kb on - strand at 479.370 kb on - strand at 479.376 kb on - strand at 479.464 kb on - strand at 479.577 kb on + strand at 479.578 kb on - strand at 479.578 kb on - strand at 479.686 kb on + strand at 480.012 kb on + strand, within Psyr_0442 at 480.012 kb on + strand, within Psyr_0442 at 480.012 kb on + strand, within Psyr_0442 at 480.012 kb on + strand, within Psyr_0442 at 480.012 kb on + strand, within Psyr_0442 at 480.012 kb on + strand, within Psyr_0442 at 480.013 kb on - strand, within Psyr_0442 at 480.013 kb on - strand, within Psyr_0442 at 480.013 kb on - strand, within Psyr_0442 at 480.013 kb on - strand, within Psyr_0442 at 480.013 kb on - strand, within Psyr_0442 at 480.024 kb on + strand, within Psyr_0442 at 480.025 kb on - strand, within Psyr_0442 at 480.102 kb on + strand, within Psyr_0442 at 480.102 kb on + strand, within Psyr_0442 at 480.102 kb on + strand, within Psyr_0442 at 480.102 kb on + strand, within Psyr_0442 at 480.103 kb on - strand, within Psyr_0442 at 480.103 kb on - strand, within Psyr_0442 at 480.103 kb on - strand, within Psyr_0442 at 480.103 kb on - strand, within Psyr_0442 at 480.103 kb on - strand, within Psyr_0442 at 480.103 kb on - strand, within Psyr_0442
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 477,829 - Psyr_0440 0.63 +1.3 477,984 + Psyr_0440 0.83 -1.4 477,984 + Psyr_0440 0.83 +1.0 478,144 + +0.7 478,145 - -1.1 478,303 - +0.2 478,303 - +2.0 478,303 - +1.6 478,332 - -0.0 478,332 - -1.3 478,332 - +0.5 478,363 + +0.9 478,363 + +0.6 478,492 + -0.6 478,492 + +1.9 478,492 + -0.4 478,493 - +1.6 478,493 - +0.9 478,493 - +0.5 478,493 - +1.8 478,493 - +0.3 478,493 - +1.5 478,493 - +0.9 478,493 - -1.3 478,494 + +2.4 478,494 + -0.8 478,494 + -0.9 478,494 + +0.8 478,495 - +0.5 478,495 - -0.2 478,495 - -0.4 478,743 + +1.0 478,743 + +1.3 478,743 + +1.3 478,743 + -2.3 478,743 + -3.0 478,812 + -2.1 478,829 + -1.1 478,829 + +1.5 478,829 + -1.2 478,829 + -1.3 478,830 - +0.6 478,830 - -0.0 478,830 - -0.4 478,830 - +0.7 478,830 - -0.3 478,830 - +0.4 478,830 - +0.5 478,830 - -1.9 478,830 - +0.1 478,830 - -0.0 478,969 + Psyr_0441 0.40 +0.9 478,970 - Psyr_0441 0.40 +1.7 479,041 - Psyr_0441 0.58 -0.8 479,041 - Psyr_0441 0.58 -0.1 479,041 - Psyr_0441 0.58 +1.0 479,156 + Psyr_0441 0.87 +0.7 479,196 - -2.0 479,196 - -1.4 479,197 + +0.4 479,197 + -0.2 479,197 + -2.6 479,197 + +1.1 479,197 + -1.0 479,198 - -1.5 479,198 - -1.8 479,198 - -2.9 479,198 - -0.3 479,198 - +0.7 479,198 - +0.3 479,198 - -0.4 479,198 - -0.1 479,198 - -0.6 479,198 - +0.6 479,198 - +0.9 479,198 - -1.1 479,255 - +0.4 479,283 + +1.7 479,296 + -1.1 479,305 - -0.3 479,370 - +1.3 479,376 - -0.8 479,464 - -1.5 479,577 + -0.3 479,578 - -3.3 479,578 - -0.4 479,686 + +1.3 480,012 + Psyr_0442 0.24 -0.7 480,012 + Psyr_0442 0.24 +2.2 480,012 + Psyr_0442 0.24 -3.1 480,012 + Psyr_0442 0.24 +0.5 480,012 + Psyr_0442 0.24 -0.1 480,012 + Psyr_0442 0.24 +0.9 480,013 - Psyr_0442 0.24 +0.7 480,013 - Psyr_0442 0.24 +0.6 480,013 - Psyr_0442 0.24 -0.0 480,013 - Psyr_0442 0.24 -2.1 480,013 - Psyr_0442 0.24 +0.3 480,024 + Psyr_0442 0.25 -0.9 480,025 - Psyr_0442 0.25 -0.9 480,102 + Psyr_0442 0.29 -2.0 480,102 + Psyr_0442 0.29 +0.1 480,102 + Psyr_0442 0.29 +0.0 480,102 + Psyr_0442 0.29 +0.5 480,103 - Psyr_0442 0.29 +0.2 480,103 - Psyr_0442 0.29 -2.9 480,103 - Psyr_0442 0.29 +0.6 480,103 - Psyr_0442 0.29 +0.7 480,103 - Psyr_0442 0.29 +0.3 480,103 - Psyr_0442 0.29 -0.5
Or see this region's nucleotide sequence