Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0222

Experiment: apoplastic; Green bean; 6 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0221 and Psyr_0222 are separated by 96 nucleotidesPsyr_0222 and Psyr_0223 are separated by 133 nucleotides Psyr_0221: Psyr_0221 - Phosphopantothenate-cysteine ligase / Phosphopantothenoylcysteine decarboxylase, at 235,108 to 236,355 _0221 Psyr_0222: Psyr_0222 - DNA replication and repair protein RadC, at 236,452 to 237,126 _0222 Psyr_0223: Psyr_0223 - extracellular solute-binding protein, family 5, at 237,260 to 238,846 _0223 Position (kb) 236 237 238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 236.403 kb on - strandat 236.451 kb on + strandat 236.451 kb on + strandat 236.451 kb on + strandat 236.452 kb on - strandat 236.452 kb on - strandat 236.452 kb on - strandat 236.452 kb on - strandat 236.457 kb on + strandat 236.582 kb on + strand, within Psyr_0222at 236.583 kb on - strand, within Psyr_0222at 236.583 kb on - strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.785 kb on + strand, within Psyr_0222at 236.786 kb on - strand, within Psyr_0222at 236.786 kb on - strand, within Psyr_0222at 236.786 kb on - strand, within Psyr_0222at 236.786 kb on - strand, within Psyr_0222at 236.873 kb on + strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.874 kb on - strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.902 kb on + strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.903 kb on - strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.906 kb on + strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 236.907 kb on - strand, within Psyr_0222at 237.124 kb on + strandat 237.124 kb on + strandat 237.124 kb on + strandat 237.124 kb on + strandat 237.125 kb on - strandat 237.125 kb on - strandat 237.143 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.261 kb on + strandat 237.262 kb on - strandat 237.262 kb on - strandat 237.262 kb on - strandat 237.262 kb on - strandat 237.262 kb on - strandat 237.280 kb on - strandat 237.408 kb on + strandat 237.408 kb on + strandat 237.408 kb on + strandat 237.409 kb on - strandat 237.446 kb on - strand, within Psyr_0223at 237.483 kb on + strand, within Psyr_0223at 237.742 kb on + strand, within Psyr_0223at 237.743 kb on - strand, within Psyr_0223at 237.743 kb on - strand, within Psyr_0223at 237.743 kb on - strand, within Psyr_0223at 237.743 kb on - strand, within Psyr_0223at 237.743 kb on - strand, within Psyr_0223at 237.834 kb on + strand, within Psyr_0223at 237.903 kb on + strand, within Psyr_0223at 237.903 kb on + strand, within Psyr_0223at 237.903 kb on + strand, within Psyr_0223at 237.903 kb on + strand, within Psyr_0223at 237.903 kb on + strand, within Psyr_0223at 237.904 kb on - strand, within Psyr_0223at 237.904 kb on - strand, within Psyr_0223

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days
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236,403 - +0.8
236,451 + +0.8
236,451 + -0.2
236,451 + +0.0
236,452 - +0.5
236,452 - -3.0
236,452 - +0.4
236,452 - +1.1
236,457 + +1.8
236,582 + Psyr_0222 0.19 +0.1
236,583 - Psyr_0222 0.19 -1.1
236,583 - Psyr_0222 0.19 -1.0
236,785 + Psyr_0222 0.49 +1.9
236,785 + Psyr_0222 0.49 +1.0
236,785 + Psyr_0222 0.49 +1.5
236,785 + Psyr_0222 0.49 +0.8
236,785 + Psyr_0222 0.49 +0.3
236,786 - Psyr_0222 0.49 +1.4
236,786 - Psyr_0222 0.49 -0.4
236,786 - Psyr_0222 0.49 -0.0
236,786 - Psyr_0222 0.49 +1.1
236,873 + Psyr_0222 0.62 +0.6
236,874 - Psyr_0222 0.63 +1.3
236,874 - Psyr_0222 0.63 +1.0
236,874 - Psyr_0222 0.63 -0.2
236,874 - Psyr_0222 0.63 +3.3
236,874 - Psyr_0222 0.63 +0.4
236,902 + Psyr_0222 0.67 -0.4
236,902 + Psyr_0222 0.67 +0.4
236,902 + Psyr_0222 0.67 +0.0
236,902 + Psyr_0222 0.67 +0.3
236,902 + Psyr_0222 0.67 +0.9
236,902 + Psyr_0222 0.67 +1.0
236,902 + Psyr_0222 0.67 -0.2
236,902 + Psyr_0222 0.67 +0.2
236,902 + Psyr_0222 0.67 +1.6
236,902 + Psyr_0222 0.67 -0.5
236,902 + Psyr_0222 0.67 -1.6
236,902 + Psyr_0222 0.67 +0.2
236,903 - Psyr_0222 0.67 -0.2
236,903 - Psyr_0222 0.67 +0.5
236,903 - Psyr_0222 0.67 -0.6
236,903 - Psyr_0222 0.67 +1.3
236,903 - Psyr_0222 0.67 +1.5
236,903 - Psyr_0222 0.67 +0.7
236,903 - Psyr_0222 0.67 +1.0
236,903 - Psyr_0222 0.67 -2.0
236,903 - Psyr_0222 0.67 +0.4
236,903 - Psyr_0222 0.67 -0.6
236,903 - Psyr_0222 0.67 -0.9
236,903 - Psyr_0222 0.67 -0.1
236,906 + Psyr_0222 0.67 +1.4
236,906 + Psyr_0222 0.67 +1.6
236,906 + Psyr_0222 0.67 +0.7
236,906 + Psyr_0222 0.67 -0.9
236,906 + Psyr_0222 0.67 +1.3
236,906 + Psyr_0222 0.67 -1.1
236,906 + Psyr_0222 0.67 -0.3
236,907 - Psyr_0222 0.67 +0.4
236,907 - Psyr_0222 0.67 +4.4
236,907 - Psyr_0222 0.67 +1.2
236,907 - Psyr_0222 0.67 +0.3
236,907 - Psyr_0222 0.67 +0.2
236,907 - Psyr_0222 0.67 -0.3
236,907 - Psyr_0222 0.67 +1.2
236,907 - Psyr_0222 0.67 -0.9
236,907 - Psyr_0222 0.67 -0.7
236,907 - Psyr_0222 0.67 -1.5
237,124 + +0.4
237,124 + -0.4
237,124 + -0.1
237,124 + +0.8
237,125 - -1.8
237,125 - -0.0
237,143 + +1.3
237,261 + -1.4
237,261 + -0.1
237,261 + +0.4
237,261 + -0.6
237,261 + +0.0
237,261 + -0.3
237,261 + -1.0
237,261 + +0.9
237,261 + +0.3
237,261 + +0.2
237,262 - -0.4
237,262 - +1.6
237,262 - -3.4
237,262 - +2.3
237,262 - -2.6
237,280 - -1.3
237,408 + +1.4
237,408 + -1.6
237,408 + +0.8
237,409 - -2.0
237,446 - Psyr_0223 0.12 -0.9
237,483 + Psyr_0223 0.14 -4.0
237,742 + Psyr_0223 0.30 -2.4
237,743 - Psyr_0223 0.30 +1.0
237,743 - Psyr_0223 0.30 +1.1
237,743 - Psyr_0223 0.30 -2.6
237,743 - Psyr_0223 0.30 -2.5
237,743 - Psyr_0223 0.30 +0.2
237,834 + Psyr_0223 0.36 -0.6
237,903 + Psyr_0223 0.41 -0.9
237,903 + Psyr_0223 0.41 -1.6
237,903 + Psyr_0223 0.41 -0.8
237,903 + Psyr_0223 0.41 -0.2
237,903 + Psyr_0223 0.41 -1.4
237,904 - Psyr_0223 0.41 +0.6
237,904 - Psyr_0223 0.41 -0.7

Or see this region's nucleotide sequence