Experiment: apoplastic; Green bean; 6 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0163 and Psyr_0164 are separated by 9 nucleotides Psyr_0164 and Psyr_0165 are separated by 17 nucleotides Psyr_0165 and Psyr_0166 are separated by 563 nucleotides
Psyr_0163: Psyr_0163 - conserved hypothetical protein, at 177,649 to 178,356
_0163
Psyr_0164: Psyr_0164 - conserved hypothetical protein, at 178,366 to 179,082
_0164
Psyr_0165: Psyr_0165 - GCN5-related N-acetyltransferase, at 179,100 to 179,543
_0165
Psyr_0166: Psyr_0166 - hypothetical protein, at 180,107 to 181,417
_0166
Position (kb) 179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 178.143 kb on + strand, within Psyr_0163 at 178.162 kb on + strand, within Psyr_0163 at 178.162 kb on + strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.174 kb on + strand, within Psyr_0163 at 178.175 kb on - strand, within Psyr_0163 at 178.271 kb on - strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.380 kb on + strand at 178.380 kb on + strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.475 kb on + strand, within Psyr_0164 at 178.475 kb on + strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.525 kb on + strand, within Psyr_0164 at 178.525 kb on + strand, within Psyr_0164 at 178.525 kb on + strand, within Psyr_0164 at 178.525 kb on + strand, within Psyr_0164 at 178.526 kb on - strand, within Psyr_0164 at 178.526 kb on - strand, within Psyr_0164 at 178.526 kb on - strand, within Psyr_0164 at 178.526 kb on - strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.777 kb on + strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.778 kb on - strand, within Psyr_0164 at 178.789 kb on + strand, within Psyr_0164 at 178.789 kb on + strand, within Psyr_0164 at 178.789 kb on + strand, within Psyr_0164 at 178.806 kb on + strand, within Psyr_0164 at 178.806 kb on + strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.807 kb on - strand, within Psyr_0164 at 178.808 kb on + strand, within Psyr_0164 at 178.822 kb on + strand, within Psyr_0164 at 178.822 kb on + strand, within Psyr_0164 at 178.822 kb on + strand, within Psyr_0164 at 178.823 kb on - strand, within Psyr_0164 at 178.823 kb on - strand, within Psyr_0164 at 178.823 kb on - strand, within Psyr_0164 at 178.823 kb on - strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.878 kb on + strand, within Psyr_0164 at 178.879 kb on - strand, within Psyr_0164 at 178.879 kb on - strand, within Psyr_0164 at 178.879 kb on - strand, within Psyr_0164 at 178.882 kb on + strand, within Psyr_0164 at 178.882 kb on + strand, within Psyr_0164 at 178.883 kb on - strand, within Psyr_0164 at 178.883 kb on - strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.931 kb on + strand, within Psyr_0164 at 178.932 kb on - strand, within Psyr_0164 at 178.939 kb on - strand, within Psyr_0164 at 178.939 kb on - strand, within Psyr_0164 at 178.993 kb on + strand, within Psyr_0164 at 178.994 kb on - strand, within Psyr_0164 at 178.994 kb on - strand, within Psyr_0164 at 178.994 kb on - strand, within Psyr_0164 at 178.994 kb on - strand, within Psyr_0164 at 179.102 kb on - strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.129 kb on - strand at 179.209 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.253 kb on + strand, within Psyr_0165 at 179.254 kb on - strand, within Psyr_0165 at 179.254 kb on - strand, within Psyr_0165 at 179.399 kb on + strand, within Psyr_0165 at 179.424 kb on + strand, within Psyr_0165 at 179.425 kb on - strand, within Psyr_0165 at 179.458 kb on + strand, within Psyr_0165 at 179.733 kb on - strand at 179.769 kb on + strand at 179.769 kb on + strand at 179.862 kb on + strand at 179.862 kb on + strand at 179.862 kb on + strand at 179.862 kb on + strand at 179.863 kb on - strand at 179.863 kb on - strand at 179.866 kb on + strand at 179.866 kb on + strand at 179.866 kb on + strand at 179.867 kb on - strand at 179.867 kb on - strand at 179.877 kb on + strand at 179.927 kb on - strand at 180.013 kb on + strand at 180.014 kb on - strand at 180.065 kb on + strand at 180.065 kb on + strand at 180.065 kb on + strand at 180.065 kb on + strand at 180.066 kb on - strand at 180.066 kb on - strand at 180.066 kb on - strand at 180.076 kb on + strand at 180.077 kb on - strand at 180.077 kb on - strand at 180.140 kb on + strand at 180.140 kb on + strand at 180.140 kb on + strand at 180.141 kb on - strand at 180.141 kb on - strand at 180.141 kb on - strand at 180.175 kb on - strand at 180.195 kb on + strand at 180.237 kb on - strand at 180.268 kb on - strand, within Psyr_0166 at 180.399 kb on + strand, within Psyr_0166 at 180.418 kb on + strand, within Psyr_0166 at 180.473 kb on - strand, within Psyr_0166 at 180.529 kb on + strand, within Psyr_0166 at 180.529 kb on + strand, within Psyr_0166 at 180.533 kb on + strand, within Psyr_0166 at 180.533 kb on + strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166 at 180.534 kb on - strand, within Psyr_0166
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Green bean; 6 days remove 178,143 + Psyr_0163 0.70 +2.6 178,162 + Psyr_0163 0.72 +1.3 178,162 + Psyr_0163 0.72 +4.6 178,163 - Psyr_0163 0.73 +0.9 178,163 - Psyr_0163 0.73 +1.8 178,163 - Psyr_0163 0.73 -0.4 178,174 + Psyr_0163 0.74 -0.3 178,175 - Psyr_0163 0.74 +0.5 178,271 - Psyr_0163 0.88 -0.1 178,284 + Psyr_0163 0.90 +0.9 178,284 + Psyr_0163 0.90 -1.7 178,284 + Psyr_0163 0.90 -0.2 178,284 + Psyr_0163 0.90 -1.6 178,284 + Psyr_0163 0.90 -0.4 178,284 + Psyr_0163 0.90 -1.1 178,284 + Psyr_0163 0.90 -1.4 178,284 + Psyr_0163 0.90 +1.2 178,285 - Psyr_0163 0.90 -0.9 178,285 - Psyr_0163 0.90 -0.6 178,285 - Psyr_0163 0.90 -0.9 178,285 - Psyr_0163 0.90 +1.4 178,285 - Psyr_0163 0.90 +1.2 178,285 - Psyr_0163 0.90 -2.8 178,285 - Psyr_0163 0.90 -0.8 178,285 - Psyr_0163 0.90 -1.9 178,285 - Psyr_0163 0.90 -1.9 178,285 - Psyr_0163 0.90 +0.5 178,285 - Psyr_0163 0.90 +0.1 178,285 - Psyr_0163 0.90 +0.1 178,285 - Psyr_0163 0.90 -1.1 178,365 + +0.6 178,365 + -2.3 178,365 + +0.7 178,365 + -0.1 178,365 + -3.1 178,365 + +1.3 178,366 - -1.6 178,366 - +1.3 178,366 - -0.6 178,366 - -1.3 178,366 - -2.7 178,366 - +2.8 178,366 - -1.5 178,366 - -0.2 178,366 - +1.8 178,366 - +0.5 178,366 - +0.7 178,366 - +0.8 178,380 + -2.1 178,380 + -0.7 178,381 - +1.5 178,381 - -0.3 178,381 - -1.8 178,381 - +1.9 178,475 + Psyr_0164 0.15 +0.9 178,475 + Psyr_0164 0.15 +0.2 178,476 - Psyr_0164 0.15 -1.4 178,476 - Psyr_0164 0.15 -1.8 178,476 - Psyr_0164 0.15 -0.1 178,476 - Psyr_0164 0.15 -0.3 178,476 - Psyr_0164 0.15 +0.6 178,525 + Psyr_0164 0.22 -1.0 178,525 + Psyr_0164 0.22 +1.0 178,525 + Psyr_0164 0.22 -1.6 178,525 + Psyr_0164 0.22 +1.6 178,526 - Psyr_0164 0.22 +0.5 178,526 - Psyr_0164 0.22 -1.9 178,526 - Psyr_0164 0.22 -0.2 178,526 - Psyr_0164 0.22 -0.1 178,777 + Psyr_0164 0.57 -0.6 178,777 + Psyr_0164 0.57 -0.4 178,777 + Psyr_0164 0.57 -1.5 178,777 + Psyr_0164 0.57 -2.5 178,777 + Psyr_0164 0.57 +1.2 178,777 + Psyr_0164 0.57 +0.3 178,777 + Psyr_0164 0.57 -0.7 178,778 - Psyr_0164 0.57 +1.8 178,778 - Psyr_0164 0.57 +0.6 178,778 - Psyr_0164 0.57 +1.8 178,778 - Psyr_0164 0.57 -0.3 178,778 - Psyr_0164 0.57 +1.9 178,778 - Psyr_0164 0.57 +1.1 178,778 - Psyr_0164 0.57 -1.1 178,789 + Psyr_0164 0.59 -1.2 178,789 + Psyr_0164 0.59 -1.1 178,789 + Psyr_0164 0.59 -2.5 178,806 + Psyr_0164 0.61 -1.1 178,806 + Psyr_0164 0.61 -1.3 178,807 - Psyr_0164 0.62 -0.5 178,807 - Psyr_0164 0.62 +2.4 178,807 - Psyr_0164 0.62 -2.2 178,807 - Psyr_0164 0.62 -0.1 178,807 - Psyr_0164 0.62 -0.7 178,808 + Psyr_0164 0.62 +2.6 178,822 + Psyr_0164 0.64 +0.9 178,822 + Psyr_0164 0.64 +1.8 178,822 + Psyr_0164 0.64 -2.0 178,823 - Psyr_0164 0.64 +0.5 178,823 - Psyr_0164 0.64 +0.3 178,823 - Psyr_0164 0.64 +0.9 178,823 - Psyr_0164 0.64 +1.6 178,878 + Psyr_0164 0.71 +2.5 178,878 + Psyr_0164 0.71 -0.8 178,878 + Psyr_0164 0.71 +0.5 178,878 + Psyr_0164 0.71 +0.4 178,878 + Psyr_0164 0.71 +0.2 178,879 - Psyr_0164 0.72 -0.9 178,879 - Psyr_0164 0.72 -0.4 178,879 - Psyr_0164 0.72 -1.6 178,882 + Psyr_0164 0.72 -0.6 178,882 + Psyr_0164 0.72 -0.4 178,883 - Psyr_0164 0.72 -1.7 178,883 - Psyr_0164 0.72 +0.9 178,931 + Psyr_0164 0.79 +0.7 178,931 + Psyr_0164 0.79 +0.1 178,931 + Psyr_0164 0.79 -0.2 178,931 + Psyr_0164 0.79 -2.1 178,931 + Psyr_0164 0.79 -1.1 178,931 + Psyr_0164 0.79 -0.8 178,932 - Psyr_0164 0.79 +1.6 178,939 - Psyr_0164 0.80 +0.4 178,939 - Psyr_0164 0.80 +0.5 178,993 + Psyr_0164 0.87 -1.5 178,994 - Psyr_0164 0.88 +1.7 178,994 - Psyr_0164 0.88 -0.6 178,994 - Psyr_0164 0.88 -0.0 178,994 - Psyr_0164 0.88 -0.3 179,102 - +0.0 179,128 + -2.3 179,128 + +2.2 179,128 + -0.1 179,128 + -0.5 179,128 + +1.1 179,128 + -1.3 179,128 + +1.1 179,128 + -2.8 179,128 + -0.6 179,128 + -0.8 179,128 + -0.6 179,129 - +1.9 179,129 - -0.8 179,129 - -0.2 179,129 - -0.9 179,129 - -0.0 179,129 - -0.6 179,129 - -1.1 179,129 - -0.4 179,209 + Psyr_0165 0.25 -0.8 179,253 + Psyr_0165 0.34 +1.8 179,253 + Psyr_0165 0.34 +0.5 179,253 + Psyr_0165 0.34 -0.7 179,253 + Psyr_0165 0.34 +0.4 179,253 + Psyr_0165 0.34 +0.1 179,254 - Psyr_0165 0.35 -1.7 179,254 - Psyr_0165 0.35 -1.2 179,399 + Psyr_0165 0.67 +0.2 179,424 + Psyr_0165 0.73 -0.1 179,425 - Psyr_0165 0.73 +0.3 179,458 + Psyr_0165 0.81 -0.3 179,733 - -1.9 179,769 + -1.5 179,769 + +0.0 179,862 + +2.0 179,862 + -3.7 179,862 + -1.4 179,862 + +1.0 179,863 - -0.7 179,863 - -0.7 179,866 + -3.3 179,866 + -1.9 179,866 + +1.8 179,867 - +0.2 179,867 - +0.6 179,877 + -0.6 179,927 - -0.7 180,013 + -1.4 180,014 - -0.6 180,065 + -2.2 180,065 + +1.3 180,065 + -3.1 180,065 + +0.7 180,066 - -0.8 180,066 - +0.4 180,066 - +1.3 180,076 + +1.2 180,077 - -0.4 180,077 - +1.0 180,140 + +0.9 180,140 + -0.0 180,140 + +0.6 180,141 - +1.2 180,141 - -0.7 180,141 - -0.0 180,175 - -0.1 180,195 + +0.2 180,237 - +2.0 180,268 - Psyr_0166 0.12 +0.5 180,399 + Psyr_0166 0.22 -0.5 180,418 + Psyr_0166 0.24 +0.9 180,473 - Psyr_0166 0.28 +1.6 180,529 + Psyr_0166 0.32 +1.1 180,529 + Psyr_0166 0.32 +1.4 180,533 + Psyr_0166 0.32 +1.3 180,533 + Psyr_0166 0.32 +0.9 180,534 - Psyr_0166 0.33 -0.3 180,534 - Psyr_0166 0.33 +0.8 180,534 - Psyr_0166 0.33 -2.3 180,534 - Psyr_0166 0.33 +1.5 180,534 - Psyr_0166 0.33 +1.0 180,534 - Psyr_0166 0.33 +0.9 180,534 - Psyr_0166 0.33 +0.3
Or see this region's nucleotide sequence