Experiment: LB no stress 48 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_764 and Pf6N2E2_765 are separated by 91 nucleotides Pf6N2E2_765 and Pf6N2E2_766 are separated by 58 nucleotides Pf6N2E2_766 and Pf6N2E2_767 are separated by 236 nucleotides
Pf6N2E2_764 - Fap amyloid fiber secretin, at 875,512 to 876,747
_764
Pf6N2E2_765 - Fap system putative outer membrane protein, at 876,839 to 877,585
_765
Pf6N2E2_766 - Fap protein with C39 domain, at 877,644 to 878,324
_766
Pf6N2E2_767 - Fap amyloid fibril major component, at 878,561 to 879,541
_767
Position (kb) 877
878
879 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 876.663 kb on - strand at 876.754 kb on + strand at 876.755 kb on - strand at 876.755 kb on - strand at 876.788 kb on + strand at 876.788 kb on + strand at 876.788 kb on + strand at 876.789 kb on - strand at 876.797 kb on + strand at 876.797 kb on + strand at 876.797 kb on + strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.798 kb on - strand at 876.808 kb on + strand at 876.808 kb on + strand at 876.835 kb on + strand at 876.835 kb on + strand at 876.835 kb on + strand at 876.835 kb on + strand at 876.836 kb on - strand at 876.836 kb on - strand at 876.836 kb on - strand at 876.959 kb on - strand, within Pf6N2E2_765 at 877.197 kb on + strand, within Pf6N2E2_765 at 877.197 kb on + strand, within Pf6N2E2_765 at 877.197 kb on + strand, within Pf6N2E2_765 at 877.198 kb on - strand, within Pf6N2E2_765 at 877.335 kb on + strand, within Pf6N2E2_765 at 877.335 kb on + strand, within Pf6N2E2_765 at 877.336 kb on - strand, within Pf6N2E2_765 at 877.417 kb on + strand, within Pf6N2E2_765 at 877.417 kb on + strand, within Pf6N2E2_765 at 877.418 kb on - strand, within Pf6N2E2_765 at 877.618 kb on + strand at 877.618 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.663 kb on - strand at 877.771 kb on + strand, within Pf6N2E2_766 at 877.834 kb on + strand, within Pf6N2E2_766 at 877.867 kb on + strand, within Pf6N2E2_766 at 877.894 kb on - strand, within Pf6N2E2_766 at 877.920 kb on + strand, within Pf6N2E2_766 at 878.014 kb on + strand, within Pf6N2E2_766 at 878.014 kb on + strand, within Pf6N2E2_766 at 878.119 kb on + strand, within Pf6N2E2_766 at 878.331 kb on + strand at 878.338 kb on - strand at 878.562 kb on + strand at 878.562 kb on + strand at 878.562 kb on + strand at 878.563 kb on - strand at 878.563 kb on - strand at 878.563 kb on - strand at 878.860 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.892 kb on + strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.893 kb on - strand, within Pf6N2E2_767 at 878.919 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.135 kb on + strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.136 kb on - strand, within Pf6N2E2_767 at 879.145 kb on + strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.191 kb on - strand, within Pf6N2E2_767 at 879.268 kb on + strand, within Pf6N2E2_767
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 48 hours remove 876,663 - -1.2 876,754 + +1.4 876,755 - -0.4 876,755 - -1.1 876,788 + -0.3 876,788 + +0.9 876,788 + -0.5 876,789 - -0.1 876,797 + +0.3 876,797 + -0.7 876,797 + +0.2 876,798 - -0.1 876,798 - -0.5 876,798 - -1.6 876,798 - -1.0 876,798 - -0.0 876,798 - -1.6 876,808 + -0.6 876,808 + +0.4 876,835 + -0.5 876,835 + +0.8 876,835 + +0.0 876,835 + -1.8 876,836 - +0.4 876,836 - -0.3 876,836 - -0.4 876,959 - Pf6N2E2_765 0.16 +0.4 877,197 + Pf6N2E2_765 0.48 +2.4 877,197 + Pf6N2E2_765 0.48 -1.0 877,197 + Pf6N2E2_765 0.48 +0.4 877,198 - Pf6N2E2_765 0.48 -0.5 877,335 + Pf6N2E2_765 0.66 -0.6 877,335 + Pf6N2E2_765 0.66 -0.2 877,336 - Pf6N2E2_765 0.67 -1.5 877,417 + Pf6N2E2_765 0.77 -1.3 877,417 + Pf6N2E2_765 0.77 -0.1 877,418 - Pf6N2E2_765 0.78 -1.3 877,618 + +0.3 877,618 + +0.0 877,622 + +1.1 877,622 + -1.8 877,622 + +0.1 877,623 - +0.2 877,623 - +0.2 877,623 - -1.1 877,623 - +1.6 877,623 - +0.3 877,623 - +0.0 877,663 - -1.3 877,771 + Pf6N2E2_766 0.19 +1.9 877,834 + Pf6N2E2_766 0.28 +0.2 877,867 + Pf6N2E2_766 0.33 +0.3 877,894 - Pf6N2E2_766 0.37 +1.2 877,920 + Pf6N2E2_766 0.41 +0.3 878,014 + Pf6N2E2_766 0.54 +1.1 878,014 + Pf6N2E2_766 0.54 +0.5 878,119 + Pf6N2E2_766 0.70 +0.2 878,331 + -0.8 878,338 - -3.0 878,562 + -0.5 878,562 + -0.7 878,562 + +0.7 878,563 - +0.5 878,563 - +0.6 878,563 - +0.2 878,860 + Pf6N2E2_767 0.30 +2.3 878,892 + Pf6N2E2_767 0.34 -0.6 878,892 + Pf6N2E2_767 0.34 -1.0 878,892 + Pf6N2E2_767 0.34 -0.7 878,892 + Pf6N2E2_767 0.34 +0.4 878,893 - Pf6N2E2_767 0.34 -1.0 878,893 - Pf6N2E2_767 0.34 +2.0 878,893 - Pf6N2E2_767 0.34 +0.3 878,893 - Pf6N2E2_767 0.34 -0.2 878,893 - Pf6N2E2_767 0.34 +0.2 878,893 - Pf6N2E2_767 0.34 +0.1 878,893 - Pf6N2E2_767 0.34 +1.3 878,919 + Pf6N2E2_767 0.36 -0.9 879,135 + Pf6N2E2_767 0.59 +1.1 879,135 + Pf6N2E2_767 0.59 -0.3 879,135 + Pf6N2E2_767 0.59 +0.6 879,135 + Pf6N2E2_767 0.59 -0.7 879,136 - Pf6N2E2_767 0.59 -2.7 879,136 - Pf6N2E2_767 0.59 -0.1 879,136 - Pf6N2E2_767 0.59 -1.8 879,145 + Pf6N2E2_767 0.60 -0.1 879,191 - Pf6N2E2_767 0.64 +0.0 879,191 - Pf6N2E2_767 0.64 -1.4 879,268 + Pf6N2E2_767 0.72 +1.2
Or see this region's nucleotide sequence