Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3077

Experiment: LB no stress 48 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3076 and Pf6N2E2_3077 are separated by 178 nucleotidesPf6N2E2_3077 and Pf6N2E2_3078 are separated by 32 nucleotides Pf6N2E2_3076 - Methyl-accepting chemotaxis protein, at 3,564,274 to 3,565,629 _3076 Pf6N2E2_3077 - FIG138056: a glutathione-dependent thiol reductase, at 3,565,808 to 3,566,170 _3077 Pf6N2E2_3078 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 3,566,203 to 3,567,237 _3078 Position (kb) 3565 3566 3567Strain fitness (log2 ratio) -2 -1 0 1at 3564.821 kb on + strand, within Pf6N2E2_3076at 3564.821 kb on + strand, within Pf6N2E2_3076at 3564.821 kb on + strand, within Pf6N2E2_3076at 3564.872 kb on + strand, within Pf6N2E2_3076at 3564.910 kb on + strand, within Pf6N2E2_3076at 3564.911 kb on - strand, within Pf6N2E2_3076at 3564.911 kb on - strand, within Pf6N2E2_3076at 3564.911 kb on - strand, within Pf6N2E2_3076at 3564.911 kb on - strand, within Pf6N2E2_3076at 3565.029 kb on + strand, within Pf6N2E2_3076at 3565.029 kb on + strand, within Pf6N2E2_3076at 3565.383 kb on + strand, within Pf6N2E2_3076at 3565.383 kb on + strand, within Pf6N2E2_3076at 3565.383 kb on + strand, within Pf6N2E2_3076at 3565.384 kb on - strand, within Pf6N2E2_3076at 3565.384 kb on - strand, within Pf6N2E2_3076at 3565.435 kb on + strand, within Pf6N2E2_3076at 3565.435 kb on + strand, within Pf6N2E2_3076at 3565.435 kb on + strand, within Pf6N2E2_3076at 3565.436 kb on - strand, within Pf6N2E2_3076at 3565.436 kb on - strand, within Pf6N2E2_3076at 3565.436 kb on - strand, within Pf6N2E2_3076at 3565.436 kb on - strand, within Pf6N2E2_3076at 3565.436 kb on - strand, within Pf6N2E2_3076at 3565.436 kb on - strand, within Pf6N2E2_3076at 3565.436 kb on - strand, within Pf6N2E2_3076at 3565.437 kb on + strand, within Pf6N2E2_3076at 3565.438 kb on - strand, within Pf6N2E2_3076at 3565.666 kb on - strandat 3565.666 kb on - strandat 3565.830 kb on + strandat 3565.899 kb on + strand, within Pf6N2E2_3077at 3565.899 kb on + strand, within Pf6N2E2_3077at 3565.919 kb on + strand, within Pf6N2E2_3077at 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.150 kb on + strandat 3566.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 48 hours
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3,564,821 + Pf6N2E2_3076 0.40 -0.2
3,564,821 + Pf6N2E2_3076 0.40 +0.6
3,564,821 + Pf6N2E2_3076 0.40 -0.6
3,564,872 + Pf6N2E2_3076 0.44 -0.4
3,564,910 + Pf6N2E2_3076 0.47 +0.8
3,564,911 - Pf6N2E2_3076 0.47 +0.2
3,564,911 - Pf6N2E2_3076 0.47 -0.0
3,564,911 - Pf6N2E2_3076 0.47 +0.5
3,564,911 - Pf6N2E2_3076 0.47 +0.3
3,565,029 + Pf6N2E2_3076 0.56 +0.4
3,565,029 + Pf6N2E2_3076 0.56 +0.5
3,565,383 + Pf6N2E2_3076 0.82 -0.5
3,565,383 + Pf6N2E2_3076 0.82 +0.0
3,565,383 + Pf6N2E2_3076 0.82 +0.6
3,565,384 - Pf6N2E2_3076 0.82 +0.8
3,565,384 - Pf6N2E2_3076 0.82 -1.5
3,565,435 + Pf6N2E2_3076 0.86 +0.1
3,565,435 + Pf6N2E2_3076 0.86 -0.5
3,565,435 + Pf6N2E2_3076 0.86 +0.6
3,565,436 - Pf6N2E2_3076 0.86 -1.7
3,565,436 - Pf6N2E2_3076 0.86 +1.3
3,565,436 - Pf6N2E2_3076 0.86 -0.4
3,565,436 - Pf6N2E2_3076 0.86 +0.8
3,565,436 - Pf6N2E2_3076 0.86 +0.1
3,565,436 - Pf6N2E2_3076 0.86 -0.3
3,565,436 - Pf6N2E2_3076 0.86 -0.0
3,565,437 + Pf6N2E2_3076 0.86 -0.3
3,565,438 - Pf6N2E2_3076 0.86 -2.5
3,565,666 - +0.1
3,565,666 - +1.2
3,565,830 + +0.3
3,565,899 + Pf6N2E2_3077 0.25 -1.5
3,565,899 + Pf6N2E2_3077 0.25 +0.2
3,565,919 + Pf6N2E2_3077 0.31 -1.1
3,566,150 + +1.0
3,566,150 + +1.1
3,566,150 + -0.1
3,566,150 + +0.2
3,566,150 + +0.9
3,566,150 + +0.5
3,566,150 + +0.7
3,566,150 + +1.2
3,566,150 + +0.1
3,566,150 + +1.2
3,566,150 + -0.6
3,566,168 + +1.0

Or see this region's nucleotide sequence