Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1804

Experiment: LB no stress 48 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1802 and Pf6N2E2_1803 overlap by 8 nucleotidesPf6N2E2_1803 and Pf6N2E2_1804 overlap by 4 nucleotidesPf6N2E2_1804 and Pf6N2E2_1805 are separated by 49 nucleotides Pf6N2E2_1802 - polysaccharide deacetylase, at 2,131,715 to 2,132,563 _1802 Pf6N2E2_1803 - Polysaccharide deacetylase, at 2,132,556 to 2,133,443 _1803 Pf6N2E2_1804 - Immune-responsive protein 1, at 2,133,440 to 2,134,834 _1804 Pf6N2E2_1805 - Multidrug resistance protein B, at 2,134,884 to 2,136,029 _1805 Position (kb) 2133 2134 2135Strain fitness (log2 ratio) -2 -1 0 1 2at 2132.502 kb on + strandat 2133.114 kb on + strand, within Pf6N2E2_1803at 2133.115 kb on - strand, within Pf6N2E2_1803at 2133.172 kb on - strand, within Pf6N2E2_1803at 2133.234 kb on + strand, within Pf6N2E2_1803at 2133.235 kb on - strand, within Pf6N2E2_1803at 2133.440 kb on - strandat 2133.541 kb on + strandat 2134.345 kb on - strand, within Pf6N2E2_1804at 2134.424 kb on + strand, within Pf6N2E2_1804at 2134.425 kb on - strand, within Pf6N2E2_1804at 2134.620 kb on + strand, within Pf6N2E2_1804at 2134.620 kb on + strand, within Pf6N2E2_1804at 2134.620 kb on + strand, within Pf6N2E2_1804at 2134.620 kb on + strand, within Pf6N2E2_1804at 2134.621 kb on - strand, within Pf6N2E2_1804at 2134.621 kb on - strand, within Pf6N2E2_1804at 2134.723 kb on - strandat 2134.742 kb on - strandat 2134.742 kb on - strandat 2134.742 kb on - strandat 2134.842 kb on + strandat 2134.842 kb on + strandat 2134.843 kb on - strandat 2134.845 kb on - strandat 2134.956 kb on - strandat 2135.032 kb on - strand, within Pf6N2E2_1805at 2135.032 kb on - strand, within Pf6N2E2_1805at 2135.040 kb on + strand, within Pf6N2E2_1805at 2135.535 kb on + strand, within Pf6N2E2_1805

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 48 hours
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2,132,502 + -0.8
2,133,114 + Pf6N2E2_1803 0.63 -0.7
2,133,115 - Pf6N2E2_1803 0.63 +0.5
2,133,172 - Pf6N2E2_1803 0.69 +0.7
2,133,234 + Pf6N2E2_1803 0.76 +0.4
2,133,235 - Pf6N2E2_1803 0.76 +0.4
2,133,440 - -0.1
2,133,541 + +0.4
2,134,345 - Pf6N2E2_1804 0.65 -0.6
2,134,424 + Pf6N2E2_1804 0.71 -1.6
2,134,425 - Pf6N2E2_1804 0.71 -0.6
2,134,620 + Pf6N2E2_1804 0.85 -1.4
2,134,620 + Pf6N2E2_1804 0.85 -0.7
2,134,620 + Pf6N2E2_1804 0.85 +0.8
2,134,620 + Pf6N2E2_1804 0.85 -1.9
2,134,621 - Pf6N2E2_1804 0.85 -1.4
2,134,621 - Pf6N2E2_1804 0.85 +0.1
2,134,723 - +0.4
2,134,742 - -0.4
2,134,742 - -0.1
2,134,742 - +0.4
2,134,842 + -0.2
2,134,842 + -1.0
2,134,843 - +0.7
2,134,845 - +1.2
2,134,956 - +2.2
2,135,032 - Pf6N2E2_1805 0.13 +0.5
2,135,032 - Pf6N2E2_1805 0.13 -0.7
2,135,040 + Pf6N2E2_1805 0.14 +0.6
2,135,535 + Pf6N2E2_1805 0.57 -1.0

Or see this region's nucleotide sequence