Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06155

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06140 and AO353_06145 are separated by 94 nucleotidesAO353_06145 and AO353_06150 are separated by 146 nucleotidesAO353_06150 and AO353_06155 are separated by 170 nucleotidesAO353_06155 and AO353_06160 overlap by 4 nucleotidesAO353_06160 and AO353_06165 overlap by 47 nucleotides AO353_06140: AO353_06140 - MFS transporter, at 1,370,238 to 1,371,431 _06140 AO353_06145: AO353_06145 - copper resistance protein CopZ, at 1,371,526 to 1,371,723 _06145 AO353_06150: AO353_06150 - hypothetical protein, at 1,371,870 to 1,372,247 _06150 AO353_06155: AO353_06155 - copper-transporting ATPase, at 1,372,418 to 1,374,814 _06155 AO353_06160: AO353_06160 - transcriptional regulator, at 1,374,811 to 1,375,224 _06160 AO353_06165: AO353_06165 - MFS transporter, at 1,375,178 to 1,376,419 _06165 Position (kb) 1372 1373 1374 1375Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1371.447 kb on - strandat 1371.447 kb on - strandat 1371.471 kb on + strandat 1371.471 kb on + strandat 1371.471 kb on + strandat 1371.471 kb on + strandat 1371.472 kb on - strandat 1371.472 kb on - strandat 1371.472 kb on - strandat 1371.515 kb on - strandat 1371.517 kb on + strandat 1371.518 kb on - strandat 1371.715 kb on + strandat 1371.715 kb on + strandat 1371.715 kb on + strandat 1371.715 kb on + strandat 1371.715 kb on + strandat 1371.715 kb on + strandat 1371.715 kb on + strandat 1371.715 kb on + strandat 1371.715 kb on + strandat 1371.716 kb on - strandat 1371.716 kb on - strandat 1371.716 kb on - strandat 1371.716 kb on - strandat 1371.716 kb on - strandat 1371.716 kb on - strandat 1371.892 kb on + strandat 1371.892 kb on + strandat 1371.893 kb on - strandat 1371.893 kb on - strandat 1371.893 kb on - strandat 1371.945 kb on + strand, within AO353_06150at 1371.945 kb on + strand, within AO353_06150at 1371.945 kb on + strand, within AO353_06150at 1371.945 kb on + strand, within AO353_06150at 1371.945 kb on + strand, within AO353_06150at 1371.946 kb on - strand, within AO353_06150at 1371.946 kb on - strand, within AO353_06150at 1371.946 kb on - strand, within AO353_06150at 1371.946 kb on - strand, within AO353_06150at 1371.946 kb on - strand, within AO353_06150at 1371.946 kb on - strand, within AO353_06150at 1371.946 kb on - strand, within AO353_06150at 1372.008 kb on + strand, within AO353_06150at 1372.008 kb on + strand, within AO353_06150at 1372.008 kb on + strand, within AO353_06150at 1372.008 kb on + strand, within AO353_06150at 1372.008 kb on + strand, within AO353_06150at 1372.008 kb on + strand, within AO353_06150at 1372.008 kb on + strand, within AO353_06150at 1372.009 kb on - strand, within AO353_06150at 1372.009 kb on - strand, within AO353_06150at 1372.009 kb on - strand, within AO353_06150at 1372.009 kb on - strand, within AO353_06150at 1372.009 kb on - strand, within AO353_06150at 1372.080 kb on + strand, within AO353_06150at 1372.080 kb on + strand, within AO353_06150at 1372.080 kb on + strand, within AO353_06150at 1372.080 kb on + strand, within AO353_06150at 1372.081 kb on - strand, within AO353_06150at 1372.081 kb on - strand, within AO353_06150at 1372.218 kb on + strandat 1372.218 kb on + strandat 1372.219 kb on - strandat 1372.219 kb on - strandat 1372.219 kb on - strandat 1372.219 kb on - strandat 1372.219 kb on - strandat 1372.219 kb on - strandat 1372.219 kb on - strandat 1372.265 kb on - strandat 1372.287 kb on - strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.348 kb on + strandat 1372.349 kb on - strandat 1372.349 kb on - strandat 1372.349 kb on - strandat 1372.349 kb on - strandat 1372.349 kb on - strandat 1372.349 kb on - strandat 1372.349 kb on - strandat 1372.349 kb on - strandat 1372.349 kb on - strandat 1372.349 kb on - strandat 1372.390 kb on + strandat 1372.390 kb on + strandat 1372.390 kb on + strandat 1372.390 kb on + strandat 1372.390 kb on + strandat 1372.391 kb on - strandat 1372.391 kb on - strandat 1372.391 kb on - strandat 1372.401 kb on + strandat 1372.402 kb on - strandat 1372.402 kb on - strandat 1372.410 kb on + strandat 1372.410 kb on + strandat 1372.411 kb on - strandat 1372.411 kb on - strandat 1372.411 kb on - strandat 1372.411 kb on - strandat 1372.411 kb on - strandat 1372.613 kb on + strandat 1372.654 kb on + strandat 1373.030 kb on + strand, within AO353_06155at 1373.030 kb on + strand, within AO353_06155at 1373.030 kb on + strand, within AO353_06155at 1373.030 kb on + strand, within AO353_06155at 1373.030 kb on + strand, within AO353_06155at 1373.030 kb on + strand, within AO353_06155at 1373.031 kb on - strand, within AO353_06155at 1373.031 kb on - strand, within AO353_06155at 1373.031 kb on - strand, within AO353_06155at 1373.031 kb on - strand, within AO353_06155at 1373.031 kb on - strand, within AO353_06155at 1373.123 kb on + strand, within AO353_06155at 1373.123 kb on + strand, within AO353_06155at 1373.123 kb on + strand, within AO353_06155at 1373.123 kb on + strand, within AO353_06155at 1373.123 kb on + strand, within AO353_06155at 1373.123 kb on + strand, within AO353_06155at 1373.123 kb on + strand, within AO353_06155at 1373.123 kb on + strand, within AO353_06155at 1373.123 kb on + strand, within AO353_06155at 1373.124 kb on - strand, within AO353_06155at 1373.124 kb on - strand, within AO353_06155at 1373.149 kb on + strand, within AO353_06155at 1373.165 kb on + strand, within AO353_06155at 1373.165 kb on + strandat 1373.165 kb on + strand, within AO353_06155at 1373.166 kb on - strand, within AO353_06155at 1373.213 kb on + strand, within AO353_06155at 1373.213 kb on + strand, within AO353_06155at 1373.214 kb on - strand, within AO353_06155at 1373.214 kb on - strand, within AO353_06155at 1373.214 kb on - strand, within AO353_06155at 1373.214 kb on - strand, within AO353_06155at 1373.557 kb on + strand, within AO353_06155at 1373.557 kb on + strand, within AO353_06155at 1373.558 kb on - strand, within AO353_06155at 1373.653 kb on - strand, within AO353_06155at 1373.685 kb on - strand, within AO353_06155at 1374.127 kb on + strand, within AO353_06155at 1374.127 kb on + strand, within AO353_06155at 1374.389 kb on - strand, within AO353_06155at 1374.627 kb on - strandat 1374.627 kb on - strandat 1374.627 kb on - strandat 1374.665 kb on + strandat 1374.665 kb on + strandat 1374.665 kb on + strandat 1374.665 kb on + strandat 1374.665 kb on + strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.756 kb on + strandat 1374.757 kb on - strandat 1374.768 kb on + strandat 1374.769 kb on - strandat 1374.769 kb on - strandat 1374.846 kb on + strandat 1374.865 kb on + strand, within AO353_06160at 1374.865 kb on + strand, within AO353_06160at 1374.868 kb on + strand, within AO353_06160at 1374.868 kb on + strand, within AO353_06160at 1374.869 kb on - strand, within AO353_06160at 1374.869 kb on - strand, within AO353_06160at 1374.869 kb on - strand, within AO353_06160at 1374.869 kb on - strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.926 kb on - strand, within AO353_06160at 1374.926 kb on - strand, within AO353_06160at 1374.926 kb on - strand, within AO353_06160at 1375.241 kb on + strandat 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.309 kb on - strand, within AO353_06165at 1375.309 kb on - strand, within AO353_06165at 1375.309 kb on - strand, within AO353_06165at 1375.309 kb on - strand, within AO353_06165at 1375.482 kb on + strand, within AO353_06165at 1375.483 kb on - strand, within AO353_06165at 1375.483 kb on - strand, within AO353_06165at 1375.483 kb on - strand, within AO353_06165at 1375.684 kb on + strand, within AO353_06165at 1375.685 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,371,447 - -0.2
1,371,447 - +1.3
1,371,471 + -0.0
1,371,471 + -0.6
1,371,471 + -0.6
1,371,471 + -0.6
1,371,472 - +0.3
1,371,472 - +0.2
1,371,472 - -0.5
1,371,515 - -0.1
1,371,517 + -0.6
1,371,518 - -0.3
1,371,715 + -1.0
1,371,715 + -0.2
1,371,715 + -1.3
1,371,715 + -0.4
1,371,715 + +0.2
1,371,715 + +0.4
1,371,715 + -0.9
1,371,715 + -0.2
1,371,715 + -0.8
1,371,716 - +0.3
1,371,716 - -0.2
1,371,716 - -0.2
1,371,716 - +0.8
1,371,716 - -0.8
1,371,716 - -0.5
1,371,892 + -0.1
1,371,892 + -1.1
1,371,893 - +0.6
1,371,893 - -1.2
1,371,893 - +0.3
1,371,945 + AO353_06150 0.20 +0.2
1,371,945 + AO353_06150 0.20 -0.8
1,371,945 + AO353_06150 0.20 +0.0
1,371,945 + AO353_06150 0.20 +0.2
1,371,945 + AO353_06150 0.20 -1.6
1,371,946 - AO353_06150 0.20 +0.8
1,371,946 - AO353_06150 0.20 +0.6
1,371,946 - AO353_06150 0.20 -0.9
1,371,946 - AO353_06150 0.20 -1.6
1,371,946 - AO353_06150 0.20 +0.6
1,371,946 - AO353_06150 0.20 -0.2
1,371,946 - AO353_06150 0.20 -1.8
1,372,008 + AO353_06150 0.37 +0.2
1,372,008 + AO353_06150 0.37 -0.2
1,372,008 + AO353_06150 0.37 -1.1
1,372,008 + AO353_06150 0.37 +1.4
1,372,008 + AO353_06150 0.37 -0.6
1,372,008 + AO353_06150 0.37 -0.2
1,372,008 + AO353_06150 0.37 -0.2
1,372,009 - AO353_06150 0.37 +1.6
1,372,009 - AO353_06150 0.37 -0.8
1,372,009 - AO353_06150 0.37 -1.6
1,372,009 - AO353_06150 0.37 -0.1
1,372,009 - AO353_06150 0.37 -0.6
1,372,080 + AO353_06150 0.56 -2.2
1,372,080 + AO353_06150 0.56 -0.2
1,372,080 + AO353_06150 0.56 -0.8
1,372,080 + AO353_06150 0.56 -0.2
1,372,081 - AO353_06150 0.56 +0.2
1,372,081 - AO353_06150 0.56 +1.3
1,372,218 + +0.8
1,372,218 + -2.2
1,372,219 - -0.5
1,372,219 - -1.1
1,372,219 - +0.3
1,372,219 - -0.7
1,372,219 - -1.1
1,372,219 - -0.6
1,372,219 - +0.6
1,372,265 - -0.6
1,372,287 - -0.3
1,372,348 + +0.6
1,372,348 + +0.1
1,372,348 + +0.8
1,372,348 + +0.2
1,372,348 + +0.3
1,372,348 + -0.6
1,372,348 + -0.4
1,372,348 + -1.2
1,372,348 + -0.1
1,372,348 + +0.3
1,372,348 + +0.9
1,372,348 + +0.2
1,372,349 - -0.4
1,372,349 - -0.2
1,372,349 - +0.1
1,372,349 - +0.3
1,372,349 - -1.4
1,372,349 - -1.1
1,372,349 - -0.2
1,372,349 - +0.4
1,372,349 - -1.2
1,372,349 - -2.2
1,372,390 + +1.8
1,372,390 + +0.2
1,372,390 + +0.5
1,372,390 + -0.2
1,372,390 + -0.0
1,372,391 - -1.7
1,372,391 - +0.2
1,372,391 - -1.8
1,372,401 + -2.1
1,372,402 - +0.2
1,372,402 - -1.2
1,372,410 + -0.8
1,372,410 + -2.0
1,372,411 - -0.4
1,372,411 - -2.8
1,372,411 - -1.9
1,372,411 - -1.1
1,372,411 - -1.4
1,372,613 + -0.6
1,372,654 + -2.2
1,373,030 + AO353_06155 0.26 -1.2
1,373,030 + AO353_06155 0.26 +0.1
1,373,030 + AO353_06155 0.26 +1.8
1,373,030 + AO353_06155 0.26 -2.0
1,373,030 + AO353_06155 0.26 -2.4
1,373,030 + AO353_06155 0.26 -0.6
1,373,031 - AO353_06155 0.26 -3.5
1,373,031 - AO353_06155 0.26 -1.4
1,373,031 - AO353_06155 0.26 -1.1
1,373,031 - AO353_06155 0.26 -3.0
1,373,031 - AO353_06155 0.26 -0.8
1,373,123 + AO353_06155 0.29 -3.2
1,373,123 + AO353_06155 0.29 -2.5
1,373,123 + AO353_06155 0.29 -0.2
1,373,123 + AO353_06155 0.29 -1.6
1,373,123 + AO353_06155 0.29 +0.3
1,373,123 + AO353_06155 0.29 -2.2
1,373,123 + AO353_06155 0.29 +1.2
1,373,123 + AO353_06155 0.29 -3.3
1,373,123 + AO353_06155 0.29 -3.2
1,373,124 - AO353_06155 0.29 -3.5
1,373,124 - AO353_06155 0.29 -2.1
1,373,149 + AO353_06155 0.30 -2.7
1,373,165 + AO353_06155 0.31 -0.8
1,373,165 + -0.6
1,373,165 + AO353_06155 0.31 -2.2
1,373,166 - AO353_06155 0.31 -3.2
1,373,213 + AO353_06155 0.33 +0.8
1,373,213 + AO353_06155 0.33 -3.3
1,373,214 - AO353_06155 0.33 -1.2
1,373,214 - AO353_06155 0.33 -1.6
1,373,214 - AO353_06155 0.33 -2.5
1,373,214 - AO353_06155 0.33 +0.2
1,373,557 + AO353_06155 0.48 -2.2
1,373,557 + AO353_06155 0.48 -1.2
1,373,558 - AO353_06155 0.48 -1.7
1,373,653 - AO353_06155 0.52 -0.6
1,373,685 - AO353_06155 0.53 -3.5
1,374,127 + AO353_06155 0.71 -2.5
1,374,127 + AO353_06155 0.71 -1.2
1,374,389 - AO353_06155 0.82 -0.4
1,374,627 - -4.3
1,374,627 - -1.1
1,374,627 - -1.7
1,374,665 + -3.2
1,374,665 + +0.2
1,374,665 + -1.6
1,374,665 + -2.9
1,374,665 + -0.3
1,374,666 - -2.2
1,374,666 - -2.2
1,374,666 - -3.9
1,374,666 - -1.4
1,374,666 - -2.1
1,374,666 - -3.4
1,374,756 + -0.5
1,374,757 - -2.1
1,374,768 + -0.2
1,374,769 - -1.4
1,374,769 - +0.5
1,374,846 + -1.1
1,374,865 + AO353_06160 0.13 -0.1
1,374,865 + AO353_06160 0.13 -0.1
1,374,868 + AO353_06160 0.14 -1.8
1,374,868 + AO353_06160 0.14 -0.2
1,374,869 - AO353_06160 0.14 -1.2
1,374,869 - AO353_06160 0.14 -0.7
1,374,869 - AO353_06160 0.14 -1.1
1,374,869 - AO353_06160 0.14 +0.3
1,374,925 + AO353_06160 0.28 -0.4
1,374,925 + AO353_06160 0.28 -0.1
1,374,925 + AO353_06160 0.28 -0.8
1,374,925 + AO353_06160 0.28 -2.3
1,374,925 + AO353_06160 0.28 -0.8
1,374,925 + AO353_06160 0.28 -1.3
1,374,925 + AO353_06160 0.28 +0.8
1,374,925 + AO353_06160 0.28 -2.7
1,374,925 + AO353_06160 0.28 -1.3
1,374,926 - AO353_06160 0.28 -1.6
1,374,926 - AO353_06160 0.28 -1.6
1,374,926 - AO353_06160 0.28 -2.0
1,375,241 + +0.3
1,375,308 + AO353_06165 0.10 +1.1
1,375,308 + AO353_06165 0.10 -1.1
1,375,308 + AO353_06165 0.10 -0.3
1,375,308 + AO353_06165 0.10 -1.5
1,375,308 + AO353_06165 0.10 -1.2
1,375,308 + AO353_06165 0.10 -0.1
1,375,309 - AO353_06165 0.11 +0.9
1,375,309 - AO353_06165 0.11 -0.9
1,375,309 - AO353_06165 0.11 +0.5
1,375,309 - AO353_06165 0.11 -0.5
1,375,482 + AO353_06165 0.24 -1.1
1,375,483 - AO353_06165 0.25 -0.2
1,375,483 - AO353_06165 0.25 -1.0
1,375,483 - AO353_06165 0.25 -0.2
1,375,684 + AO353_06165 0.41 -0.1
1,375,685 - +0.2

Or see this region's nucleotide sequence