Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04285

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_04275 and AO353_04280 are separated by 1 nucleotidesAO353_04280 and AO353_04285 overlap by 11 nucleotidesAO353_04285 and AO353_04290 are separated by 176 nucleotides AO353_04275: AO353_04275 - polyamine ABC transporter ATP-binding protein, at 920,211 to 921,248 _04275 AO353_04280: AO353_04280 - spermidine/putrescine ABC transporter permease, at 921,250 to 922,197 _04280 AO353_04285: AO353_04285 - spermidine/putrescine ABC transporter permease, at 922,187 to 923,029 _04285 AO353_04290: AO353_04290 - 1-pyrroline dehydrogenase, at 923,206 to 924,630 _04290 Position (kb) 922 923 924Strain fitness (log2 ratio) -2 -1 0 1 2at 921.337 kb on + strandat 921.338 kb on - strandat 921.338 kb on - strandat 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.385 kb on + strand, within AO353_04280at 921.386 kb on - strand, within AO353_04280at 921.386 kb on - strand, within AO353_04280at 921.386 kb on - strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.424 kb on + strand, within AO353_04280at 921.425 kb on - strand, within AO353_04280at 921.425 kb on - strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.583 kb on + strand, within AO353_04280at 921.584 kb on - strand, within AO353_04280at 921.584 kb on - strand, within AO353_04280at 921.584 kb on - strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.586 kb on + strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.587 kb on - strand, within AO353_04280at 921.598 kb on + strand, within AO353_04280at 921.599 kb on - strand, within AO353_04280at 921.599 kb on - strand, within AO353_04280at 921.628 kb on + strand, within AO353_04280at 921.629 kb on - strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.661 kb on + strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.662 kb on - strand, within AO353_04280at 921.676 kb on + strand, within AO353_04280at 921.676 kb on + strand, within AO353_04280at 921.832 kb on + strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.833 kb on - strand, within AO353_04280at 921.917 kb on + strand, within AO353_04280at 921.917 kb on + strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 921.918 kb on - strand, within AO353_04280at 922.054 kb on + strand, within AO353_04280at 922.054 kb on + strand, within AO353_04280at 922.055 kb on - strand, within AO353_04280at 922.075 kb on + strand, within AO353_04280at 922.075 kb on + strand, within AO353_04280at 922.075 kb on + strand, within AO353_04280at 922.076 kb on - strand, within AO353_04280at 922.139 kb on + strandat 922.139 kb on + strandat 922.139 kb on + strandat 922.139 kb on + strandat 922.140 kb on - strandat 922.153 kb on + strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.154 kb on - strandat 922.664 kb on + strand, within AO353_04285at 922.664 kb on + strand, within AO353_04285at 922.665 kb on - strand, within AO353_04285at 922.665 kb on - strand, within AO353_04285at 922.665 kb on - strand, within AO353_04285at 922.694 kb on - strand, within AO353_04285at 922.694 kb on - strand, within AO353_04285at 922.700 kb on + strand, within AO353_04285at 922.700 kb on + strand, within AO353_04285at 922.701 kb on - strand, within AO353_04285at 922.758 kb on - strand, within AO353_04285at 922.758 kb on - strand, within AO353_04285at 922.979 kb on + strandat 922.979 kb on + strandat 922.979 kb on + strandat 922.980 kb on - strandat 922.980 kb on - strandat 922.982 kb on + strandat 922.982 kb on + strandat 922.982 kb on + strandat 922.983 kb on - strandat 922.983 kb on - strandat 922.983 kb on - strandat 923.024 kb on - strandat 923.027 kb on + strandat 923.027 kb on + strandat 923.027 kb on + strandat 923.027 kb on + strandat 923.027 kb on + strandat 923.028 kb on - strandat 923.028 kb on - strandat 923.028 kb on - strandat 923.028 kb on - strandat 923.028 kb on - strandat 923.041 kb on + strandat 923.041 kb on + strandat 923.042 kb on - strandat 923.122 kb on + strandat 923.122 kb on + strandat 923.122 kb on + strandat 923.123 kb on - strandat 923.123 kb on - strandat 923.123 kb on - strandat 923.205 kb on + strandat 923.205 kb on + strandat 923.206 kb on - strandat 923.267 kb on + strandat 923.292 kb on - strandat 923.297 kb on + strandat 923.297 kb on + strandat 923.482 kb on + strand, within AO353_04290at 923.483 kb on - strand, within AO353_04290at 923.483 kb on - strand, within AO353_04290at 923.525 kb on + strand, within AO353_04290at 923.525 kb on + strand, within AO353_04290at 923.525 kb on + strand, within AO353_04290at 923.525 kb on + strand, within AO353_04290at 923.525 kb on + strand, within AO353_04290at 923.525 kb on + strand, within AO353_04290at 923.525 kb on + strand, within AO353_04290at 923.525 kb on + strand, within AO353_04290at 923.525 kb on + strand, within AO353_04290at 923.526 kb on - strand, within AO353_04290at 923.526 kb on - strand, within AO353_04290at 923.526 kb on - strand, within AO353_04290at 923.526 kb on - strand, within AO353_04290at 923.581 kb on + strand, within AO353_04290at 923.581 kb on + strand, within AO353_04290at 923.581 kb on + strand, within AO353_04290at 923.581 kb on + strand, within AO353_04290at 923.581 kb on + strand, within AO353_04290at 923.582 kb on - strand, within AO353_04290at 923.653 kb on + strand, within AO353_04290at 923.653 kb on + strand, within AO353_04290at 923.654 kb on - strand, within AO353_04290at 923.654 kb on - strand, within AO353_04290at 923.654 kb on - strand, within AO353_04290at 923.706 kb on + strandat 923.765 kb on + strand, within AO353_04290at 923.765 kb on + strand, within AO353_04290at 923.766 kb on - strand, within AO353_04290at 923.792 kb on + strand, within AO353_04290at 923.793 kb on - strand, within AO353_04290at 923.820 kb on + strand, within AO353_04290at 923.821 kb on - strand, within AO353_04290at 924.006 kb on + strand, within AO353_04290at 924.007 kb on - strand, within AO353_04290at 924.007 kb on - strand, within AO353_04290at 924.025 kb on + strand, within AO353_04290at 924.026 kb on - strand, within AO353_04290at 924.026 kb on - strand, within AO353_04290at 924.026 kb on - strand, within AO353_04290at 924.026 kb on - strand, within AO353_04290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
921,337 + -1.0
921,338 - -0.1
921,338 - -0.3
921,385 + AO353_04280 0.14 -0.7
921,385 + AO353_04280 0.14 -0.1
921,385 + AO353_04280 0.14 -0.4
921,385 + AO353_04280 0.14 -1.2
921,385 + AO353_04280 0.14 -0.5
921,386 - AO353_04280 0.14 -0.7
921,386 - AO353_04280 0.14 -0.5
921,386 - AO353_04280 0.14 -0.6
921,424 + AO353_04280 0.18 -0.8
921,424 + AO353_04280 0.18 -1.4
921,424 + AO353_04280 0.18 -1.5
921,424 + AO353_04280 0.18 +1.1
921,425 - AO353_04280 0.18 +1.1
921,425 - AO353_04280 0.18 +0.6
921,583 + AO353_04280 0.35 -1.1
921,583 + AO353_04280 0.35 -0.2
921,583 + AO353_04280 0.35 +0.6
921,583 + AO353_04280 0.35 -0.5
921,583 + AO353_04280 0.35 +0.1
921,583 + AO353_04280 0.35 +1.6
921,583 + AO353_04280 0.35 +0.2
921,583 + AO353_04280 0.35 -1.3
921,583 + AO353_04280 0.35 -0.1
921,584 - AO353_04280 0.35 -2.4
921,584 - AO353_04280 0.35 -0.6
921,584 - AO353_04280 0.35 +0.5
921,586 + AO353_04280 0.35 +0.3
921,586 + AO353_04280 0.35 -0.3
921,586 + AO353_04280 0.35 +0.9
921,586 + AO353_04280 0.35 -0.8
921,586 + AO353_04280 0.35 +0.3
921,586 + AO353_04280 0.35 -0.6
921,586 + AO353_04280 0.35 +1.2
921,586 + AO353_04280 0.35 -0.3
921,586 + AO353_04280 0.35 -0.4
921,587 - AO353_04280 0.36 -0.1
921,587 - AO353_04280 0.36 -0.6
921,587 - AO353_04280 0.36 -0.8
921,587 - AO353_04280 0.36 -0.1
921,587 - AO353_04280 0.36 +0.1
921,587 - AO353_04280 0.36 +0.9
921,587 - AO353_04280 0.36 -0.5
921,587 - AO353_04280 0.36 -1.1
921,587 - AO353_04280 0.36 +0.2
921,587 - AO353_04280 0.36 +1.3
921,598 + AO353_04280 0.37 -0.0
921,599 - AO353_04280 0.37 +1.9
921,599 - AO353_04280 0.37 -0.4
921,628 + AO353_04280 0.40 +0.3
921,629 - AO353_04280 0.40 -0.2
921,661 + AO353_04280 0.43 +0.4
921,661 + AO353_04280 0.43 -0.1
921,661 + AO353_04280 0.43 -0.4
921,661 + AO353_04280 0.43 +0.5
921,661 + AO353_04280 0.43 +0.7
921,661 + AO353_04280 0.43 -2.4
921,662 - AO353_04280 0.43 -0.4
921,662 - AO353_04280 0.43 +0.4
921,662 - AO353_04280 0.43 +0.5
921,662 - AO353_04280 0.43 -1.1
921,662 - AO353_04280 0.43 -0.9
921,662 - AO353_04280 0.43 -0.2
921,662 - AO353_04280 0.43 +0.6
921,676 + AO353_04280 0.45 -1.5
921,676 + AO353_04280 0.45 +0.5
921,832 + AO353_04280 0.61 +0.4
921,833 - AO353_04280 0.61 -0.5
921,833 - AO353_04280 0.61 -2.1
921,833 - AO353_04280 0.61 -0.6
921,833 - AO353_04280 0.61 +0.2
921,917 + AO353_04280 0.70 -0.3
921,917 + AO353_04280 0.70 +0.1
921,918 - AO353_04280 0.70 -0.4
921,918 - AO353_04280 0.70 -2.0
921,918 - AO353_04280 0.70 +2.0
921,918 - AO353_04280 0.70 -1.2
922,054 + AO353_04280 0.85 -0.6
922,054 + AO353_04280 0.85 +0.2
922,055 - AO353_04280 0.85 -0.4
922,075 + AO353_04280 0.87 -0.8
922,075 + AO353_04280 0.87 -1.4
922,075 + AO353_04280 0.87 -0.4
922,076 - AO353_04280 0.87 +0.1
922,139 + +0.6
922,139 + +0.0
922,139 + +0.8
922,139 + -1.1
922,140 - -1.7
922,153 + -1.7
922,154 - +0.1
922,154 - +0.3
922,154 - -0.0
922,154 - -1.9
922,154 - +1.1
922,664 + AO353_04285 0.57 +0.3
922,664 + AO353_04285 0.57 +0.1
922,665 - AO353_04285 0.57 -1.7
922,665 - AO353_04285 0.57 -0.6
922,665 - AO353_04285 0.57 +0.1
922,694 - AO353_04285 0.60 -0.1
922,694 - AO353_04285 0.60 -1.7
922,700 + AO353_04285 0.61 -0.4
922,700 + AO353_04285 0.61 -0.5
922,701 - AO353_04285 0.61 -0.0
922,758 - AO353_04285 0.68 -0.9
922,758 - AO353_04285 0.68 -1.6
922,979 + -0.7
922,979 + +0.8
922,979 + -1.0
922,980 - +0.1
922,980 - -1.3
922,982 + -1.7
922,982 + -0.9
922,982 + +0.8
922,983 - -0.3
922,983 - -1.3
922,983 - +0.7
923,024 - -1.7
923,027 + +0.4
923,027 + +0.6
923,027 + +0.1
923,027 + +0.3
923,027 + -0.3
923,028 - +0.7
923,028 - +0.1
923,028 - -0.9
923,028 - +1.1
923,028 - -1.7
923,041 + +0.1
923,041 + +1.1
923,042 - -0.2
923,122 + +0.1
923,122 + +1.5
923,122 + -0.1
923,123 - -0.3
923,123 - +0.9
923,123 - +0.3
923,205 + +0.1
923,205 + -1.5
923,206 - -0.6
923,267 + +0.5
923,292 - +0.5
923,297 + -0.6
923,297 + +0.9
923,482 + AO353_04290 0.19 +0.4
923,483 - AO353_04290 0.19 +0.6
923,483 - AO353_04290 0.19 +1.1
923,525 + AO353_04290 0.22 +0.4
923,525 + AO353_04290 0.22 -0.9
923,525 + AO353_04290 0.22 -0.6
923,525 + AO353_04290 0.22 +1.4
923,525 + AO353_04290 0.22 +0.9
923,525 + AO353_04290 0.22 -0.1
923,525 + AO353_04290 0.22 +0.1
923,525 + AO353_04290 0.22 +1.2
923,525 + AO353_04290 0.22 -0.9
923,526 - AO353_04290 0.22 -1.3
923,526 - AO353_04290 0.22 +0.2
923,526 - AO353_04290 0.22 +0.6
923,526 - AO353_04290 0.22 -0.7
923,581 + AO353_04290 0.26 -0.9
923,581 + AO353_04290 0.26 -1.4
923,581 + AO353_04290 0.26 +0.1
923,581 + AO353_04290 0.26 +0.3
923,581 + AO353_04290 0.26 +1.1
923,582 - AO353_04290 0.26 +0.1
923,653 + AO353_04290 0.31 +0.6
923,653 + AO353_04290 0.31 -1.4
923,654 - AO353_04290 0.31 -1.5
923,654 - AO353_04290 0.31 +0.1
923,654 - AO353_04290 0.31 -2.1
923,706 + +1.1
923,765 + AO353_04290 0.39 +0.8
923,765 + AO353_04290 0.39 +1.6
923,766 - AO353_04290 0.39 -0.7
923,792 + AO353_04290 0.41 -2.2
923,793 - AO353_04290 0.41 -0.9
923,820 + AO353_04290 0.43 +1.9
923,821 - AO353_04290 0.43 +0.9
924,006 + AO353_04290 0.56 -1.9
924,007 - AO353_04290 0.56 +0.2
924,007 - AO353_04290 0.56 -0.6
924,025 + AO353_04290 0.57 -0.6
924,026 - AO353_04290 0.58 +1.6
924,026 - AO353_04290 0.58 +0.2
924,026 - AO353_04290 0.58 +0.3
924,026 - AO353_04290 0.58 -2.1

Or see this region's nucleotide sequence